Strain Fitness in Dechlorosoma suillum PS around Dsui_2333

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2332 and Dsui_2333 are separated by 10 nucleotidesDsui_2333 and Dsui_2334 are separated by 151 nucleotides Dsui_2332: Dsui_2332 - uracil-xanthine permease, at 2,485,682 to 2,486,923 _2332 Dsui_2333: Dsui_2333 - uracil phosphoribosyltransferase, at 2,486,934 to 2,487,560 _2333 Dsui_2334: Dsui_2334 - tRNA-dihydrouridine synthase, at 2,487,712 to 2,488,674 _2334 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2485.965 kb on - strand, within Dsui_2332at 2486.116 kb on + strand, within Dsui_2332at 2486.124 kb on - strand, within Dsui_2332at 2486.127 kb on + strandat 2486.149 kb on + strand, within Dsui_2332at 2486.162 kb on + strandat 2486.170 kb on - strand, within Dsui_2332at 2486.170 kb on - strand, within Dsui_2332at 2486.171 kb on - strand, within Dsui_2332at 2486.218 kb on + strandat 2486.368 kb on - strand, within Dsui_2332at 2486.533 kb on + strandat 2486.533 kb on + strand, within Dsui_2332at 2486.536 kb on - strand, within Dsui_2332at 2486.537 kb on - strand, within Dsui_2332at 2486.541 kb on - strand, within Dsui_2332at 2486.541 kb on - strand, within Dsui_2332at 2486.554 kb on - strand, within Dsui_2332at 2486.671 kb on - strand, within Dsui_2332at 2486.680 kb on + strandat 2486.801 kb on - strandat 2486.803 kb on + strandat 2486.811 kb on - strandat 2486.903 kb on - strandat 2486.908 kb on - strandat 2486.975 kb on - strandat 2486.983 kb on + strandat 2486.983 kb on + strandat 2486.983 kb on + strandat 2486.991 kb on - strandat 2486.991 kb on - strandat 2487.076 kb on - strand, within Dsui_2333at 2487.112 kb on + strandat 2487.197 kb on + strand, within Dsui_2333at 2487.229 kb on + strandat 2487.248 kb on - strand, within Dsui_2333at 2487.259 kb on + strandat 2487.450 kb on - strand, within Dsui_2333at 2487.620 kb on - strandat 2487.749 kb on - strandat 2488.015 kb on + strand, within Dsui_2334at 2488.040 kb on + strand, within Dsui_2334at 2488.040 kb on + strand, within Dsui_2334at 2488.076 kb on - strand, within Dsui_2334at 2488.124 kb on + strand, within Dsui_2334at 2488.260 kb on + strand, within Dsui_2334at 2488.362 kb on - strand, within Dsui_2334at 2488.461 kb on + strand, within Dsui_2334at 2488.521 kb on - strand, within Dsui_2334at 2488.539 kb on + strand, within Dsui_2334

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,485,965 - Dsui_2332 0.23 +0.7
2,486,116 + Dsui_2332 0.35 -1.1
2,486,124 - Dsui_2332 0.36 +1.3
2,486,127 + +1.3
2,486,149 + Dsui_2332 0.38 -0.9
2,486,162 + +3.3
2,486,170 - Dsui_2332 0.39 +1.3
2,486,170 - Dsui_2332 0.39 -0.8
2,486,171 - Dsui_2332 0.39 -0.4
2,486,218 + +2.3
2,486,368 - Dsui_2332 0.55 +1.1
2,486,533 + -0.3
2,486,533 + Dsui_2332 0.69 +0.3
2,486,536 - Dsui_2332 0.69 +1.0
2,486,537 - Dsui_2332 0.69 +0.1
2,486,541 - Dsui_2332 0.69 +0.3
2,486,541 - Dsui_2332 0.69 +0.6
2,486,554 - Dsui_2332 0.70 +0.2
2,486,671 - Dsui_2332 0.80 +0.3
2,486,680 + +0.7
2,486,801 - +0.3
2,486,803 + +1.3
2,486,811 - +1.3
2,486,903 - -0.4
2,486,908 - -0.1
2,486,975 - -0.1
2,486,983 + +1.3
2,486,983 + +0.3
2,486,983 + +1.3
2,486,991 - +0.8
2,486,991 - -0.2
2,487,076 - Dsui_2333 0.23 +0.3
2,487,112 + -0.1
2,487,197 + Dsui_2333 0.42 -0.1
2,487,229 + +2.3
2,487,248 - Dsui_2333 0.50 -0.6
2,487,259 + +2.3
2,487,450 - Dsui_2333 0.82 -0.5
2,487,620 - +1.7
2,487,749 - +0.7
2,488,015 + Dsui_2334 0.31 -2.3
2,488,040 + Dsui_2334 0.34 -0.4
2,488,040 + Dsui_2334 0.34 -0.7
2,488,076 - Dsui_2334 0.38 -1.0
2,488,124 + Dsui_2334 0.43 -0.7
2,488,260 + Dsui_2334 0.57 -0.1
2,488,362 - Dsui_2334 0.67 +0.3
2,488,461 + Dsui_2334 0.78 -0.4
2,488,521 - Dsui_2334 0.84 +0.2
2,488,539 + Dsui_2334 0.86 +2.4

Or see this region's nucleotide sequence