Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2254 and Dsui_2255 are separated by 53 nucleotides Dsui_2255 and Dsui_2256 are separated by 281 nucleotides
Dsui_2254: Dsui_2254 - glycine/serine hydroxymethyltransferase, at 2,403,229 to 2,404,531
_2254
Dsui_2255: Dsui_2255 - cAMP-binding protein, at 2,404,585 to 2,405,301
_2255
Dsui_2256: Dsui_2256 - flavodoxin reductase family protein, at 2,405,583 to 2,406,359
_2256
Position (kb)
2404
2405
2406 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2403.596 kb on - strand at 2403.656 kb on + strand at 2403.875 kb on + strand, within Dsui_2254 at 2403.896 kb on + strand, within Dsui_2254 at 2403.949 kb on - strand at 2403.987 kb on - strand, within Dsui_2254 at 2404.056 kb on - strand at 2404.075 kb on - strand, within Dsui_2254 at 2404.075 kb on - strand, within Dsui_2254 at 2404.123 kb on + strand, within Dsui_2254 at 2404.183 kb on - strand, within Dsui_2254 at 2404.246 kb on - strand, within Dsui_2254 at 2404.251 kb on - strand, within Dsui_2254 at 2404.265 kb on + strand, within Dsui_2254 at 2404.274 kb on - strand, within Dsui_2254 at 2404.276 kb on + strand, within Dsui_2254 at 2404.287 kb on + strand, within Dsui_2254 at 2404.295 kb on - strand at 2404.539 kb on - strand at 2404.607 kb on + strand at 2404.615 kb on - strand at 2404.615 kb on - strand at 2404.615 kb on - strand at 2404.677 kb on + strand, within Dsui_2255 at 2404.685 kb on - strand, within Dsui_2255 at 2404.829 kb on - strand, within Dsui_2255 at 2404.846 kb on - strand, within Dsui_2255 at 2404.868 kb on + strand at 2404.894 kb on + strand, within Dsui_2255 at 2404.894 kb on + strand at 2404.902 kb on - strand, within Dsui_2255 at 2404.953 kb on - strand, within Dsui_2255 at 2404.991 kb on + strand at 2405.009 kb on + strand, within Dsui_2255 at 2405.199 kb on + strand, within Dsui_2255 at 2405.222 kb on + strand, within Dsui_2255 at 2405.273 kb on + strand at 2405.278 kb on + strand at 2405.278 kb on + strand at 2405.286 kb on - strand at 2405.286 kb on - strand at 2405.311 kb on + strand at 2405.311 kb on + strand at 2405.378 kb on + strand at 2405.419 kb on - strand at 2405.419 kb on - strand at 2405.488 kb on + strand at 2405.488 kb on + strand at 2405.489 kb on - strand at 2405.653 kb on - strand at 2405.714 kb on - strand, within Dsui_2256 at 2405.905 kb on - strand, within Dsui_2256 at 2405.905 kb on - strand, within Dsui_2256 at 2405.905 kb on - strand, within Dsui_2256 at 2405.975 kb on - strand, within Dsui_2256 at 2406.130 kb on - strand, within Dsui_2256 at 2406.130 kb on - strand, within Dsui_2256 at 2406.157 kb on - strand, within Dsui_2256 at 2406.230 kb on - strand, within Dsui_2256
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,403,596 - +2.2 2,403,656 + +0.6 2,403,875 + Dsui_2254 0.50 +0.1 2,403,896 + Dsui_2254 0.51 -0.8 2,403,949 - +3.2 2,403,987 - Dsui_2254 0.58 -0.2 2,404,056 - +0.6 2,404,075 - Dsui_2254 0.65 +0.2 2,404,075 - Dsui_2254 0.65 +0.0 2,404,123 + Dsui_2254 0.69 -3.3 2,404,183 - Dsui_2254 0.73 -0.1 2,404,246 - Dsui_2254 0.78 +0.0 2,404,251 - Dsui_2254 0.78 -0.3 2,404,265 + Dsui_2254 0.80 +1.6 2,404,274 - Dsui_2254 0.80 -1.5 2,404,276 + Dsui_2254 0.80 -1.4 2,404,287 + Dsui_2254 0.81 -1.3 2,404,295 - +0.6 2,404,539 - -0.3 2,404,607 + +0.8 2,404,615 - -0.7 2,404,615 - -1.0 2,404,615 - -0.1 2,404,677 + Dsui_2255 0.13 -0.8 2,404,685 - Dsui_2255 0.14 +1.0 2,404,829 - Dsui_2255 0.34 +0.4 2,404,846 - Dsui_2255 0.36 +0.2 2,404,868 + -0.1 2,404,894 + Dsui_2255 0.43 -1.1 2,404,894 + -0.4 2,404,902 - Dsui_2255 0.44 +0.6 2,404,953 - Dsui_2255 0.51 +0.4 2,404,991 + -0.4 2,405,009 + Dsui_2255 0.59 -0.5 2,405,199 + Dsui_2255 0.86 +0.1 2,405,222 + Dsui_2255 0.89 -1.4 2,405,273 + +0.1 2,405,278 + +0.4 2,405,278 + -0.4 2,405,286 - -0.4 2,405,286 - -0.6 2,405,311 + +0.2 2,405,311 + -0.2 2,405,378 + -0.1 2,405,419 - +0.4 2,405,419 - +0.2 2,405,488 + -0.1 2,405,488 + +1.5 2,405,489 - -0.9 2,405,653 - +0.8 2,405,714 - Dsui_2256 0.17 +2.0 2,405,905 - Dsui_2256 0.41 +1.7 2,405,905 - Dsui_2256 0.41 +1.4 2,405,905 - Dsui_2256 0.41 +0.6 2,405,975 - Dsui_2256 0.50 +0.9 2,406,130 - Dsui_2256 0.70 +5.4 2,406,130 - Dsui_2256 0.70 +2.5 2,406,157 - Dsui_2256 0.74 +1.7 2,406,230 - Dsui_2256 0.83 +1.4
Or see this region's nucleotide sequence