Strain Fitness in Dechlorosoma suillum PS around Dsui_2154

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2152 and Dsui_2153 are separated by 9 nucleotidesDsui_2153 and Dsui_2154 are separated by 27 nucleotidesDsui_2154 and Dsui_2155 are separated by 269 nucleotides Dsui_2152: Dsui_2152 - molybdenum cofactor synthesis domain protein, at 2,282,686 to 2,283,912 _2152 Dsui_2153: Dsui_2153 - molybdopterin converting factor, subunit 1, at 2,283,922 to 2,284,173 _2153 Dsui_2154: Dsui_2154 - molybdopterin converting factor, large subunit, at 2,284,201 to 2,284,662 _2154 Dsui_2155: Dsui_2155 - hypothetical protein, at 2,284,932 to 2,285,822 _2155 Position (kb) 2284 2285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2283.255 kb on - strandat 2283.293 kb on - strand, within Dsui_2152at 2283.343 kb on - strandat 2283.570 kb on - strand, within Dsui_2152at 2283.741 kb on + strand, within Dsui_2152at 2283.768 kb on - strand, within Dsui_2152at 2283.801 kb on + strandat 2283.901 kb on + strandat 2283.909 kb on - strandat 2283.909 kb on - strandat 2283.966 kb on - strand, within Dsui_2153at 2283.991 kb on + strand, within Dsui_2153at 2284.104 kb on + strand, within Dsui_2153at 2284.454 kb on - strand, within Dsui_2154at 2284.462 kb on - strand, within Dsui_2154at 2284.491 kb on + strand, within Dsui_2154at 2284.793 kb on + strandat 2284.988 kb on + strandat 2285.062 kb on + strand, within Dsui_2155at 2285.078 kb on - strand, within Dsui_2155at 2285.107 kb on + strandat 2285.107 kb on + strand, within Dsui_2155at 2285.161 kb on - strand, within Dsui_2155at 2285.307 kb on - strandat 2285.358 kb on + strand, within Dsui_2155at 2285.366 kb on - strandat 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.563 kb on + strand, within Dsui_2155at 2285.621 kb on + strand, within Dsui_2155

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,283,255 - +0.7
2,283,293 - Dsui_2152 0.49 -1.2
2,283,343 - +2.3
2,283,570 - Dsui_2152 0.72 -1.7
2,283,741 + Dsui_2152 0.86 -2.4
2,283,768 - Dsui_2152 0.88 -1.5
2,283,801 + -2.7
2,283,901 + -3.4
2,283,909 - -2.1
2,283,909 - -2.1
2,283,966 - Dsui_2153 0.17 -2.6
2,283,991 + Dsui_2153 0.27 -2.3
2,284,104 + Dsui_2153 0.72 -2.5
2,284,454 - Dsui_2154 0.55 -2.1
2,284,462 - Dsui_2154 0.56 -0.2
2,284,491 + Dsui_2154 0.63 -3.4
2,284,793 + -1.7
2,284,988 + +0.2
2,285,062 + Dsui_2155 0.15 -0.2
2,285,078 - Dsui_2155 0.16 -0.6
2,285,107 + +0.7
2,285,107 + Dsui_2155 0.20 +0.6
2,285,161 - Dsui_2155 0.26 -0.4
2,285,307 - +0.7
2,285,358 + Dsui_2155 0.48 -0.2
2,285,366 - +1.7
2,285,502 - Dsui_2155 0.64 +1.4
2,285,502 - Dsui_2155 0.64 -0.2
2,285,502 - Dsui_2155 0.64 +0.3
2,285,502 - Dsui_2155 0.64 -2.2
2,285,502 - Dsui_2155 0.64 -1.6
2,285,563 + Dsui_2155 0.71 -0.6
2,285,621 + Dsui_2155 0.77 -0.7

Or see this region's nucleotide sequence