Strain Fitness in Dechlorosoma suillum PS around Dsui_2044

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2043 and Dsui_2044 are separated by 262 nucleotidesDsui_2044 and Dsui_2045 are separated by 150 nucleotidesDsui_2045 and Dsui_2046 are separated by 40 nucleotides Dsui_2043: Dsui_2043 - cysteine synthase, at 2,162,119 to 2,163,624 _2043 Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660 _2044 Dsui_2045: Dsui_2045 - hypothetical protein, at 2,164,811 to 2,165,128 _2045 Dsui_2046: Dsui_2046 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,165,169 to 2,166,848 _2046 Position (kb) 2163 2164 2165Strain fitness (log2 ratio) -1 0 1 2 3at 2163.094 kb on + strandat 2163.146 kb on - strand, within Dsui_2043at 2163.206 kb on - strandat 2163.228 kb on + strandat 2163.249 kb on + strandat 2163.253 kb on - strand, within Dsui_2043at 2163.305 kb on - strandat 2163.430 kb on - strand, within Dsui_2043at 2163.463 kb on - strand, within Dsui_2043at 2163.473 kb on - strand, within Dsui_2043at 2163.628 kb on + strandat 2163.628 kb on + strandat 2163.646 kb on + strandat 2163.647 kb on + strandat 2163.647 kb on + strandat 2163.647 kb on + strandat 2163.655 kb on - strandat 2163.845 kb on + strandat 2163.845 kb on + strandat 2163.853 kb on - strandat 2163.973 kb on + strand, within Dsui_2044at 2164.025 kb on - strand, within Dsui_2044at 2164.072 kb on - strandat 2164.075 kb on + strand, within Dsui_2044at 2164.089 kb on + strandat 2164.114 kb on - strandat 2164.174 kb on + strand, within Dsui_2044at 2164.259 kb on - strandat 2164.409 kb on + strand, within Dsui_2044at 2164.761 kb on + strandat 2164.791 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.804 kb on - strandat 2164.869 kb on + strandat 2164.893 kb on - strandat 2164.950 kb on + strand, within Dsui_2045at 2165.021 kb on + strand, within Dsui_2045at 2165.047 kb on - strand, within Dsui_2045at 2165.066 kb on + strand, within Dsui_2045at 2165.076 kb on + strand, within Dsui_2045at 2165.265 kb on + strandat 2165.317 kb on + strandat 2165.382 kb on + strand, within Dsui_2046at 2165.590 kb on + strandat 2165.638 kb on - strandat 2165.640 kb on + strandat 2165.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,163,094 + +1.3
2,163,146 - Dsui_2043 0.68 -0.3
2,163,206 - -0.5
2,163,228 + +0.7
2,163,249 + +0.7
2,163,253 - Dsui_2043 0.75 -0.0
2,163,305 - +1.3
2,163,430 - Dsui_2043 0.87 -1.4
2,163,463 - Dsui_2043 0.89 -0.3
2,163,473 - Dsui_2043 0.90 +0.1
2,163,628 + +0.7
2,163,628 + +0.7
2,163,646 + +2.3
2,163,647 + +0.7
2,163,647 + +1.3
2,163,647 + +0.2
2,163,655 - +2.3
2,163,845 + +0.7
2,163,845 + +2.3
2,163,853 - +1.9
2,163,973 + Dsui_2044 0.11 +1.9
2,164,025 - Dsui_2044 0.18 +0.3
2,164,072 - +2.3
2,164,075 + Dsui_2044 0.24 +0.7
2,164,089 + +0.7
2,164,114 - +1.3
2,164,174 + Dsui_2044 0.37 +0.2
2,164,259 - +1.3
2,164,409 + Dsui_2044 0.67 +0.1
2,164,761 + +2.9
2,164,791 + -0.1
2,164,796 + +0.2
2,164,796 + +0.2
2,164,796 + +1.3
2,164,796 + -1.7
2,164,796 + -1.0
2,164,804 - +1.3
2,164,869 + +0.3
2,164,893 - +1.3
2,164,950 + Dsui_2045 0.44 -0.5
2,165,021 + Dsui_2045 0.66 +0.8
2,165,047 - Dsui_2045 0.74 +1.4
2,165,066 + Dsui_2045 0.80 -0.7
2,165,076 + Dsui_2045 0.83 -1.1
2,165,265 + -0.0
2,165,317 + -1.0
2,165,382 + Dsui_2046 0.13 +0.5
2,165,590 + +1.3
2,165,638 - +0.3
2,165,640 + +1.7
2,165,648 - +1.3

Or see this region's nucleotide sequence