Strain Fitness in Dechlorosoma suillum PS around Dsui_2038

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2037 and Dsui_2038 are separated by 4 nucleotidesDsui_2038 and Dsui_2039 are separated by 227 nucleotides Dsui_2037: Dsui_2037 - putative alpha/beta hydrolase, at 2,156,716 to 2,157,663 _2037 Dsui_2038: Dsui_2038 - putative regulatory protein, FmdB family, at 2,157,668 to 2,157,901 _2038 Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415 _2039 Position (kb) 2157 2158Strain fitness (log2 ratio) -2 -1 0 1 2at 2156.784 kb on - strandat 2156.844 kb on - strand, within Dsui_2037at 2156.869 kb on + strand, within Dsui_2037at 2156.869 kb on + strand, within Dsui_2037at 2156.869 kb on + strandat 2157.002 kb on - strandat 2157.022 kb on + strand, within Dsui_2037at 2157.030 kb on - strandat 2157.030 kb on - strand, within Dsui_2037at 2157.037 kb on + strand, within Dsui_2037at 2157.111 kb on + strand, within Dsui_2037at 2157.195 kb on - strand, within Dsui_2037at 2157.323 kb on + strand, within Dsui_2037at 2157.401 kb on + strand, within Dsui_2037at 2157.421 kb on - strand, within Dsui_2037at 2157.615 kb on - strandat 2157.630 kb on - strandat 2157.693 kb on + strand, within Dsui_2038at 2157.694 kb on - strand, within Dsui_2038at 2157.824 kb on + strand, within Dsui_2038at 2157.832 kb on - strand, within Dsui_2038at 2157.834 kb on + strand, within Dsui_2038at 2157.834 kb on + strand, within Dsui_2038at 2157.834 kb on + strand, within Dsui_2038at 2157.842 kb on - strand, within Dsui_2038at 2157.853 kb on + strand, within Dsui_2038at 2157.861 kb on - strand, within Dsui_2038at 2157.872 kb on + strand, within Dsui_2038at 2157.897 kb on + strandat 2157.903 kb on + strandat 2157.988 kb on + strandat 2158.014 kb on - strandat 2158.083 kb on + strandat 2158.083 kb on + strandat 2158.083 kb on - strandat 2158.091 kb on - strandat 2158.377 kb on + strand, within Dsui_2039at 2158.411 kb on - strand, within Dsui_2039at 2158.447 kb on + strand, within Dsui_2039at 2158.458 kb on + strand, within Dsui_2039at 2158.490 kb on + strand, within Dsui_2039at 2158.542 kb on + strand, within Dsui_2039at 2158.558 kb on - strand, within Dsui_2039at 2158.559 kb on - strand, within Dsui_2039at 2158.617 kb on - strand, within Dsui_2039at 2158.678 kb on + strand, within Dsui_2039at 2158.691 kb on - strand, within Dsui_2039at 2158.758 kb on + strandat 2158.781 kb on + strandat 2158.801 kb on + strand, within Dsui_2039at 2158.814 kb on - strand, within Dsui_2039at 2158.832 kb on + strand, within Dsui_2039at 2158.842 kb on + strand, within Dsui_2039at 2158.884 kb on - strand, within Dsui_2039

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,156,784 - +0.3
2,156,844 - Dsui_2037 0.14 -0.3
2,156,869 + Dsui_2037 0.16 -0.8
2,156,869 + Dsui_2037 0.16 -1.3
2,156,869 + +1.6
2,157,002 - +0.5
2,157,022 + Dsui_2037 0.32 -0.6
2,157,030 - +0.7
2,157,030 - Dsui_2037 0.33 -0.9
2,157,037 + Dsui_2037 0.34 -1.2
2,157,111 + Dsui_2037 0.42 -0.7
2,157,195 - Dsui_2037 0.51 +1.0
2,157,323 + Dsui_2037 0.64 +1.6
2,157,401 + Dsui_2037 0.72 -0.1
2,157,421 - Dsui_2037 0.74 +1.3
2,157,615 - +1.3
2,157,630 - -1.3
2,157,693 + Dsui_2038 0.11 -0.8
2,157,694 - Dsui_2038 0.11 -1.9
2,157,824 + Dsui_2038 0.67 -0.4
2,157,832 - Dsui_2038 0.70 -0.5
2,157,834 + Dsui_2038 0.71 -0.4
2,157,834 + Dsui_2038 0.71 -0.5
2,157,834 + Dsui_2038 0.71 -0.3
2,157,842 - Dsui_2038 0.74 -0.1
2,157,853 + Dsui_2038 0.79 +0.2
2,157,861 - Dsui_2038 0.82 -0.7
2,157,872 + Dsui_2038 0.87 -1.5
2,157,897 + -0.8
2,157,903 + +0.2
2,157,988 + +0.1
2,158,014 - -1.3
2,158,083 + -2.0
2,158,083 + +2.2
2,158,083 - +0.2
2,158,091 - +0.2
2,158,377 + Dsui_2039 0.19 -1.0
2,158,411 - Dsui_2039 0.22 -1.0
2,158,447 + Dsui_2039 0.25 -0.3
2,158,458 + Dsui_2039 0.26 +1.2
2,158,490 + Dsui_2039 0.28 -1.3
2,158,542 + Dsui_2039 0.32 -0.2
2,158,558 - Dsui_2039 0.33 -0.3
2,158,559 - Dsui_2039 0.33 +0.6
2,158,617 - Dsui_2039 0.38 -0.2
2,158,678 + Dsui_2039 0.43 +0.1
2,158,691 - Dsui_2039 0.44 +0.4
2,158,758 + +1.3
2,158,781 + -0.0
2,158,801 + Dsui_2039 0.52 -1.2
2,158,814 - Dsui_2039 0.53 +0.4
2,158,832 + Dsui_2039 0.55 -0.9
2,158,842 + Dsui_2039 0.55 -0.4
2,158,884 - Dsui_2039 0.59 -0.3

Or see this region's nucleotide sequence