Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1723 and Dsui_1724 overlap by 4 nucleotides Dsui_1724 and Dsui_1725 overlap by 20 nucleotides Dsui_1725 and Dsui_1726 are separated by 12 nucleotides
Dsui_1723: Dsui_1723 - flagellar biosynthesis protein FlhA, at 1,813,427 to 1,815,508
_1723
Dsui_1724: Dsui_1724 - flagellar biosynthetic protein FlhF, at 1,815,505 to 1,816,872
_1724
Dsui_1725: Dsui_1725 - ATPase involved in chromosome partitioning, at 1,816,853 to 1,817,755
_1725
Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508
_1726
Position (kb)
1815
1816
1817 Strain fitness (log2 ratio)
-2
-1
0
1 at 1814.529 kb on - strand, within Dsui_1723 at 1814.550 kb on + strand, within Dsui_1723 at 1814.559 kb on - strand, within Dsui_1723 at 1814.617 kb on - strand, within Dsui_1723 at 1814.638 kb on + strand, within Dsui_1723 at 1814.649 kb on + strand, within Dsui_1723 at 1814.649 kb on + strand, within Dsui_1723 at 1814.657 kb on - strand, within Dsui_1723 at 1814.657 kb on - strand, within Dsui_1723 at 1814.684 kb on - strand, within Dsui_1723 at 1814.691 kb on - strand, within Dsui_1723 at 1814.782 kb on - strand, within Dsui_1723 at 1814.845 kb on + strand, within Dsui_1723 at 1814.906 kb on + strand, within Dsui_1723 at 1815.010 kb on + strand, within Dsui_1723 at 1815.038 kb on + strand, within Dsui_1723 at 1815.046 kb on - strand, within Dsui_1723 at 1815.065 kb on + strand, within Dsui_1723 at 1815.073 kb on - strand, within Dsui_1723 at 1815.137 kb on + strand, within Dsui_1723 at 1815.137 kb on + strand, within Dsui_1723 at 1815.137 kb on + strand, within Dsui_1723 at 1815.142 kb on + strand, within Dsui_1723 at 1815.145 kb on - strand, within Dsui_1723 at 1815.150 kb on - strand, within Dsui_1723 at 1815.152 kb on - strand, within Dsui_1723 at 1815.341 kb on + strand at 1815.347 kb on + strand at 1815.430 kb on + strand at 1815.437 kb on - strand at 1815.490 kb on + strand at 1815.552 kb on - strand at 1815.671 kb on + strand, within Dsui_1724 at 1815.693 kb on + strand, within Dsui_1724 at 1815.719 kb on - strand, within Dsui_1724 at 1815.727 kb on - strand, within Dsui_1724 at 1815.909 kb on + strand, within Dsui_1724 at 1815.951 kb on + strand, within Dsui_1724 at 1815.981 kb on + strand, within Dsui_1724 at 1815.989 kb on - strand, within Dsui_1724 at 1816.003 kb on + strand, within Dsui_1724 at 1816.010 kb on - strand, within Dsui_1724 at 1816.122 kb on + strand, within Dsui_1724 at 1816.252 kb on - strand, within Dsui_1724 at 1816.299 kb on + strand, within Dsui_1724 at 1816.338 kb on - strand, within Dsui_1724 at 1816.375 kb on + strand, within Dsui_1724 at 1816.438 kb on - strand, within Dsui_1724 at 1816.572 kb on - strand, within Dsui_1724 at 1816.679 kb on + strand, within Dsui_1724 at 1816.687 kb on - strand, within Dsui_1724 at 1816.927 kb on - strand at 1817.019 kb on - strand, within Dsui_1725 at 1817.019 kb on - strand at 1817.230 kb on - strand, within Dsui_1725 at 1817.236 kb on - strand, within Dsui_1725 at 1817.376 kb on + strand, within Dsui_1725 at 1817.443 kb on + strand, within Dsui_1725 at 1817.451 kb on - strand, within Dsui_1725 at 1817.517 kb on + strand, within Dsui_1725 at 1817.540 kb on + strand, within Dsui_1725 at 1817.548 kb on - strand, within Dsui_1725 at 1817.655 kb on + strand, within Dsui_1725 at 1817.655 kb on + strand, within Dsui_1725 at 1817.749 kb on - strand at 1817.750 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,814,529 - Dsui_1723 0.53 -1.6 1,814,550 + Dsui_1723 0.54 -0.3 1,814,559 - Dsui_1723 0.54 -1.2 1,814,617 - Dsui_1723 0.57 -1.9 1,814,638 + Dsui_1723 0.58 -1.6 1,814,649 + Dsui_1723 0.59 -0.6 1,814,649 + Dsui_1723 0.59 -1.3 1,814,657 - Dsui_1723 0.59 -1.4 1,814,657 - Dsui_1723 0.59 -0.3 1,814,684 - Dsui_1723 0.60 -0.4 1,814,691 - Dsui_1723 0.61 -1.4 1,814,782 - Dsui_1723 0.65 -0.8 1,814,845 + Dsui_1723 0.68 +0.3 1,814,906 + Dsui_1723 0.71 -0.9 1,815,010 + Dsui_1723 0.76 -0.5 1,815,038 + Dsui_1723 0.77 -1.0 1,815,046 - Dsui_1723 0.78 -0.7 1,815,065 + Dsui_1723 0.79 -0.7 1,815,073 - Dsui_1723 0.79 -0.5 1,815,137 + Dsui_1723 0.82 -1.6 1,815,137 + Dsui_1723 0.82 -0.8 1,815,137 + Dsui_1723 0.82 -0.8 1,815,142 + Dsui_1723 0.82 -1.6 1,815,145 - Dsui_1723 0.83 -0.6 1,815,150 - Dsui_1723 0.83 -2.0 1,815,152 - Dsui_1723 0.83 +0.2 1,815,341 + -0.9 1,815,347 + -0.9 1,815,430 + +0.8 1,815,437 - -0.7 1,815,490 + -0.4 1,815,552 - -1.5 1,815,671 + Dsui_1724 0.12 -0.6 1,815,693 + Dsui_1724 0.14 +0.9 1,815,719 - Dsui_1724 0.16 +1.5 1,815,727 - Dsui_1724 0.16 -1.0 1,815,909 + Dsui_1724 0.30 -0.9 1,815,951 + Dsui_1724 0.33 -1.4 1,815,981 + Dsui_1724 0.35 -1.4 1,815,989 - Dsui_1724 0.35 +0.2 1,816,003 + Dsui_1724 0.36 -0.8 1,816,010 - Dsui_1724 0.37 -0.5 1,816,122 + Dsui_1724 0.45 -0.7 1,816,252 - Dsui_1724 0.55 -0.9 1,816,299 + Dsui_1724 0.58 +0.2 1,816,338 - Dsui_1724 0.61 -0.0 1,816,375 + Dsui_1724 0.64 +0.2 1,816,438 - Dsui_1724 0.68 -0.8 1,816,572 - Dsui_1724 0.78 -1.0 1,816,679 + Dsui_1724 0.86 -0.6 1,816,687 - Dsui_1724 0.86 -1.5 1,816,927 - -0.9 1,817,019 - Dsui_1725 0.18 +1.2 1,817,019 - +1.3 1,817,230 - Dsui_1725 0.42 +1.0 1,817,236 - Dsui_1725 0.42 +0.6 1,817,376 + Dsui_1725 0.58 +0.5 1,817,443 + Dsui_1725 0.65 +0.7 1,817,451 - Dsui_1725 0.66 +0.4 1,817,517 + Dsui_1725 0.74 +0.7 1,817,540 + Dsui_1725 0.76 +0.0 1,817,548 - Dsui_1725 0.77 +0.3 1,817,655 + Dsui_1725 0.89 -0.3 1,817,655 + Dsui_1725 0.89 -0.8 1,817,749 - +0.9 1,817,750 + -0.3
Or see this region's nucleotide sequence