Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1718 and Dsui_1719 are separated by 18 nucleotides Dsui_1719 and Dsui_1720 are separated by 3 nucleotides Dsui_1720 and Dsui_1721 are separated by 12 nucleotides
Dsui_1718: Dsui_1718 - chemotaxis signal transduction protein, at 1,807,995 to 1,808,933
_1718
Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344
_1719
Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214
_1720
Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116
_1721
Position (kb)
1809
1810
1811 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1808.437 kb on + strand, within Dsui_1718 at 1808.648 kb on - strand, within Dsui_1718 at 1808.709 kb on + strand, within Dsui_1718 at 1808.722 kb on - strand, within Dsui_1718 at 1808.749 kb on + strand, within Dsui_1718 at 1808.749 kb on + strand, within Dsui_1718 at 1808.846 kb on + strand at 1808.921 kb on + strand at 1808.943 kb on + strand at 1808.961 kb on - strand at 1809.024 kb on - strand, within Dsui_1719 at 1809.066 kb on + strand, within Dsui_1719 at 1809.102 kb on + strand, within Dsui_1719 at 1809.192 kb on - strand, within Dsui_1719 at 1809.249 kb on + strand, within Dsui_1719 at 1809.249 kb on + strand, within Dsui_1719 at 1809.257 kb on - strand, within Dsui_1719 at 1809.299 kb on - strand, within Dsui_1719 at 1809.345 kb on + strand at 1809.353 kb on - strand at 1809.395 kb on + strand at 1809.517 kb on + strand, within Dsui_1720 at 1809.587 kb on + strand, within Dsui_1720 at 1809.650 kb on - strand, within Dsui_1720 at 1809.710 kb on - strand, within Dsui_1720 at 1809.865 kb on - strand, within Dsui_1720 at 1809.936 kb on + strand, within Dsui_1720 at 1809.992 kb on - strand, within Dsui_1720 at 1810.062 kb on + strand, within Dsui_1720 at 1810.191 kb on + strand at 1810.275 kb on - strand at 1810.328 kb on + strand at 1810.475 kb on - strand, within Dsui_1721 at 1810.483 kb on + strand, within Dsui_1721 at 1810.486 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.570 kb on - strand, within Dsui_1721 at 1810.818 kb on + strand, within Dsui_1721 at 1811.080 kb on - strand at 1811.099 kb on + strand, within Dsui_1721 at 1811.196 kb on + strand, within Dsui_1721
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,808,437 + Dsui_1718 0.47 -0.4 1,808,648 - Dsui_1718 0.70 -0.4 1,808,709 + Dsui_1718 0.76 +0.3 1,808,722 - Dsui_1718 0.77 +0.6 1,808,749 + Dsui_1718 0.80 -1.0 1,808,749 + Dsui_1718 0.80 +0.7 1,808,846 + -0.2 1,808,921 + -0.8 1,808,943 + +0.5 1,808,961 - +0.1 1,809,024 - Dsui_1719 0.18 +0.2 1,809,066 + Dsui_1719 0.29 -0.6 1,809,102 + Dsui_1719 0.38 -0.8 1,809,192 - Dsui_1719 0.61 -0.2 1,809,249 + Dsui_1719 0.76 +0.2 1,809,249 + Dsui_1719 0.76 +0.2 1,809,257 - Dsui_1719 0.78 +0.1 1,809,299 - Dsui_1719 0.88 +0.3 1,809,345 + +0.1 1,809,353 - +0.4 1,809,395 + -1.3 1,809,517 + Dsui_1720 0.19 -0.8 1,809,587 + Dsui_1720 0.28 +0.4 1,809,650 - Dsui_1720 0.35 -1.0 1,809,710 - Dsui_1720 0.42 -2.3 1,809,865 - Dsui_1720 0.60 -0.1 1,809,936 + Dsui_1720 0.68 +0.0 1,809,992 - Dsui_1720 0.74 +0.4 1,810,062 + Dsui_1720 0.82 -0.2 1,810,191 + -0.1 1,810,275 - +0.1 1,810,328 + -0.5 1,810,475 - Dsui_1721 0.13 -1.0 1,810,483 + Dsui_1721 0.14 -0.5 1,810,486 - Dsui_1721 0.14 -0.4 1,810,491 - Dsui_1721 0.14 -0.3 1,810,491 - Dsui_1721 0.14 +0.3 1,810,562 + Dsui_1721 0.18 +0.4 1,810,562 + Dsui_1721 0.18 -0.9 1,810,562 + Dsui_1721 0.18 +0.9 1,810,570 - Dsui_1721 0.18 -0.1 1,810,818 + Dsui_1721 0.31 +0.4 1,811,080 - +2.3 1,811,099 + Dsui_1721 0.46 -1.1 1,811,196 + Dsui_1721 0.51 -0.3
Or see this region's nucleotide sequence