Strain Fitness in Dechlorosoma suillum PS around Dsui_1720

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1718 and Dsui_1719 are separated by 18 nucleotidesDsui_1719 and Dsui_1720 are separated by 3 nucleotidesDsui_1720 and Dsui_1721 are separated by 12 nucleotides Dsui_1718: Dsui_1718 - chemotaxis signal transduction protein, at 1,807,995 to 1,808,933 _1718 Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344 _1719 Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214 _1720 Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116 _1721 Position (kb) 1809 1810 1811Strain fitness (log2 ratio) -2 -1 0 1 2at 1808.437 kb on + strand, within Dsui_1718at 1808.648 kb on - strand, within Dsui_1718at 1808.709 kb on + strand, within Dsui_1718at 1808.722 kb on - strand, within Dsui_1718at 1808.749 kb on + strand, within Dsui_1718at 1808.749 kb on + strand, within Dsui_1718at 1808.846 kb on + strandat 1808.921 kb on + strandat 1808.943 kb on + strandat 1808.961 kb on - strandat 1809.024 kb on - strand, within Dsui_1719at 1809.066 kb on + strand, within Dsui_1719at 1809.102 kb on + strand, within Dsui_1719at 1809.192 kb on - strand, within Dsui_1719at 1809.249 kb on + strand, within Dsui_1719at 1809.249 kb on + strand, within Dsui_1719at 1809.257 kb on - strand, within Dsui_1719at 1809.299 kb on - strand, within Dsui_1719at 1809.345 kb on + strandat 1809.353 kb on - strandat 1809.395 kb on + strandat 1809.517 kb on + strand, within Dsui_1720at 1809.587 kb on + strand, within Dsui_1720at 1809.650 kb on - strand, within Dsui_1720at 1809.710 kb on - strand, within Dsui_1720at 1809.865 kb on - strand, within Dsui_1720at 1809.936 kb on + strand, within Dsui_1720at 1809.992 kb on - strand, within Dsui_1720at 1810.062 kb on + strand, within Dsui_1720at 1810.191 kb on + strandat 1810.275 kb on - strandat 1810.328 kb on + strandat 1810.475 kb on - strand, within Dsui_1721at 1810.483 kb on + strand, within Dsui_1721at 1810.486 kb on - strand, within Dsui_1721at 1810.491 kb on - strand, within Dsui_1721at 1810.491 kb on - strand, within Dsui_1721at 1810.562 kb on + strand, within Dsui_1721at 1810.562 kb on + strand, within Dsui_1721at 1810.562 kb on + strand, within Dsui_1721at 1810.570 kb on - strand, within Dsui_1721at 1810.818 kb on + strand, within Dsui_1721at 1811.080 kb on - strandat 1811.099 kb on + strand, within Dsui_1721at 1811.196 kb on + strand, within Dsui_1721

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,808,437 + Dsui_1718 0.47 -0.4
1,808,648 - Dsui_1718 0.70 -0.4
1,808,709 + Dsui_1718 0.76 +0.3
1,808,722 - Dsui_1718 0.77 +0.6
1,808,749 + Dsui_1718 0.80 -1.0
1,808,749 + Dsui_1718 0.80 +0.7
1,808,846 + -0.2
1,808,921 + -0.8
1,808,943 + +0.5
1,808,961 - +0.1
1,809,024 - Dsui_1719 0.18 +0.2
1,809,066 + Dsui_1719 0.29 -0.6
1,809,102 + Dsui_1719 0.38 -0.8
1,809,192 - Dsui_1719 0.61 -0.2
1,809,249 + Dsui_1719 0.76 +0.2
1,809,249 + Dsui_1719 0.76 +0.2
1,809,257 - Dsui_1719 0.78 +0.1
1,809,299 - Dsui_1719 0.88 +0.3
1,809,345 + +0.1
1,809,353 - +0.4
1,809,395 + -1.3
1,809,517 + Dsui_1720 0.19 -0.8
1,809,587 + Dsui_1720 0.28 +0.4
1,809,650 - Dsui_1720 0.35 -1.0
1,809,710 - Dsui_1720 0.42 -2.3
1,809,865 - Dsui_1720 0.60 -0.1
1,809,936 + Dsui_1720 0.68 +0.0
1,809,992 - Dsui_1720 0.74 +0.4
1,810,062 + Dsui_1720 0.82 -0.2
1,810,191 + -0.1
1,810,275 - +0.1
1,810,328 + -0.5
1,810,475 - Dsui_1721 0.13 -1.0
1,810,483 + Dsui_1721 0.14 -0.5
1,810,486 - Dsui_1721 0.14 -0.4
1,810,491 - Dsui_1721 0.14 -0.3
1,810,491 - Dsui_1721 0.14 +0.3
1,810,562 + Dsui_1721 0.18 +0.4
1,810,562 + Dsui_1721 0.18 -0.9
1,810,562 + Dsui_1721 0.18 +0.9
1,810,570 - Dsui_1721 0.18 -0.1
1,810,818 + Dsui_1721 0.31 +0.4
1,811,080 - +2.3
1,811,099 + Dsui_1721 0.46 -1.1
1,811,196 + Dsui_1721 0.51 -0.3

Or see this region's nucleotide sequence