Strain Fitness in Dechlorosoma suillum PS around Dsui_1653

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1650 and Dsui_1651 are separated by 153 nucleotidesDsui_1651 and Dsui_1652 are separated by 77 nucleotidesDsui_1652 and Dsui_1653 overlap by 4 nucleotidesDsui_1653 and Dsui_1654 are separated by 348 nucleotides Dsui_1650: Dsui_1650 - copper/silver-translocating P-type ATPase, at 1,731,202 to 1,733,637 _1650 Dsui_1651: Dsui_1651 - copper chaperone, at 1,733,791 to 1,733,997 _1651 Dsui_1652: Dsui_1652 - FeoA-like protein, at 1,734,075 to 1,734,326 _1652 Dsui_1653: Dsui_1653 - ferrous iron transporter FeoB, at 1,734,323 to 1,736,323 _1653 Dsui_1654: Dsui_1654 - hypothetical protein, at 1,736,672 to 1,738,099 _1654 Position (kb) 1734 1735 1736 1737Strain fitness (log2 ratio) -2 -1 0 1 2at 1733.424 kb on + strandat 1733.431 kb on + strandat 1733.432 kb on - strandat 1733.439 kb on - strandat 1733.479 kb on + strandat 1733.522 kb on - strandat 1733.557 kb on - strandat 1733.557 kb on - strandat 1733.663 kb on + strandat 1733.844 kb on + strand, within Dsui_1651at 1733.944 kb on + strand, within Dsui_1651at 1734.006 kb on + strandat 1734.138 kb on - strand, within Dsui_1652at 1734.211 kb on + strand, within Dsui_1652at 1734.411 kb on + strandat 1734.529 kb on + strand, within Dsui_1653at 1734.537 kb on - strand, within Dsui_1653at 1734.768 kb on - strand, within Dsui_1653at 1734.773 kb on - strand, within Dsui_1653at 1734.828 kb on - strand, within Dsui_1653at 1734.828 kb on - strand, within Dsui_1653at 1734.835 kb on + strandat 1734.875 kb on + strand, within Dsui_1653at 1734.883 kb on - strand, within Dsui_1653at 1734.941 kb on + strand, within Dsui_1653at 1735.031 kb on + strand, within Dsui_1653at 1735.031 kb on + strand, within Dsui_1653at 1735.037 kb on + strandat 1735.218 kb on - strand, within Dsui_1653at 1735.341 kb on - strand, within Dsui_1653at 1735.384 kb on - strand, within Dsui_1653at 1735.411 kb on - strand, within Dsui_1653at 1735.490 kb on - strand, within Dsui_1653at 1735.495 kb on - strand, within Dsui_1653at 1735.770 kb on - strand, within Dsui_1653at 1735.847 kb on + strandat 1735.971 kb on - strand, within Dsui_1653at 1736.083 kb on + strand, within Dsui_1653at 1736.091 kb on - strand, within Dsui_1653at 1736.178 kb on - strandat 1736.240 kb on - strandat 1736.249 kb on + strandat 1736.389 kb on + strandat 1736.402 kb on - strandat 1736.447 kb on - strandat 1736.529 kb on + strandat 1736.855 kb on + strand, within Dsui_1654at 1736.874 kb on + strand, within Dsui_1654at 1736.882 kb on - strand, within Dsui_1654at 1736.892 kb on - strand, within Dsui_1654at 1737.097 kb on + strand, within Dsui_1654at 1737.097 kb on + strand, within Dsui_1654at 1737.103 kb on + strand, within Dsui_1654at 1737.156 kb on - strand, within Dsui_1654at 1737.279 kb on + strand, within Dsui_1654at 1737.289 kb on + strand, within Dsui_1654

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,733,424 + -0.0
1,733,431 + +1.0
1,733,432 - +0.3
1,733,439 - +0.6
1,733,479 + +0.1
1,733,522 - +0.4
1,733,557 - +1.4
1,733,557 - -0.3
1,733,663 + -1.0
1,733,844 + Dsui_1651 0.26 -0.5
1,733,944 + Dsui_1651 0.74 +0.3
1,734,006 + +0.6
1,734,138 - Dsui_1652 0.25 +0.8
1,734,211 + Dsui_1652 0.54 +2.0
1,734,411 + +1.0
1,734,529 + Dsui_1653 0.10 +0.7
1,734,537 - Dsui_1653 0.11 +1.2
1,734,768 - Dsui_1653 0.22 +0.8
1,734,773 - Dsui_1653 0.22 +0.7
1,734,828 - Dsui_1653 0.25 +1.5
1,734,828 - Dsui_1653 0.25 +1.4
1,734,835 + +2.0
1,734,875 + Dsui_1653 0.28 +1.0
1,734,883 - Dsui_1653 0.28 +0.9
1,734,941 + Dsui_1653 0.31 -0.0
1,735,031 + Dsui_1653 0.35 +1.3
1,735,031 + Dsui_1653 0.35 +0.4
1,735,037 + -0.5
1,735,218 - Dsui_1653 0.45 +0.3
1,735,341 - Dsui_1653 0.51 +1.1
1,735,384 - Dsui_1653 0.53 -0.1
1,735,411 - Dsui_1653 0.54 +2.0
1,735,490 - Dsui_1653 0.58 +1.5
1,735,495 - Dsui_1653 0.59 +1.0
1,735,770 - Dsui_1653 0.72 +0.5
1,735,847 + +1.3
1,735,971 - Dsui_1653 0.82 +0.3
1,736,083 + Dsui_1653 0.88 +0.6
1,736,091 - Dsui_1653 0.88 -0.1
1,736,178 - +0.4
1,736,240 - -2.4
1,736,249 + +1.4
1,736,389 + +0.2
1,736,402 - +0.7
1,736,447 - +1.3
1,736,529 + +0.3
1,736,855 + Dsui_1654 0.13 +0.4
1,736,874 + Dsui_1654 0.14 -0.5
1,736,882 - Dsui_1654 0.15 -1.4
1,736,892 - Dsui_1654 0.15 -1.0
1,737,097 + Dsui_1654 0.30 -0.0
1,737,097 + Dsui_1654 0.30 -0.3
1,737,103 + Dsui_1654 0.30 -0.3
1,737,156 - Dsui_1654 0.34 -0.7
1,737,279 + Dsui_1654 0.43 +0.5
1,737,289 + Dsui_1654 0.43 +0.5

Or see this region's nucleotide sequence