Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1443 and Dsui_1444 are separated by 233 nucleotides Dsui_1444 and Dsui_1445 are separated by 51 nucleotides
Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455
_1443
Dsui_1444: Dsui_1444 - Protein of unknown function (DUF2889), at 1,499,689 to 1,500,240
_1444
Dsui_1445: Dsui_1445 - succinyl-CoA synthetase, beta subunit, at 1,500,292 to 1,501,452
_1445
Position (kb)
1499
1500
1501 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1498.791 kb on + strand, within Dsui_1443 at 1498.825 kb on + strand, within Dsui_1443 at 1498.833 kb on - strand, within Dsui_1443 at 1499.021 kb on + strand, within Dsui_1443 at 1499.251 kb on + strand, within Dsui_1443 at 1499.277 kb on + strand, within Dsui_1443 at 1499.331 kb on - strand at 1499.662 kb on - strand at 1499.828 kb on + strand, within Dsui_1444 at 1499.864 kb on + strand, within Dsui_1444 at 1499.929 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.939 kb on + strand, within Dsui_1444 at 1499.968 kb on + strand, within Dsui_1444 at 1499.968 kb on + strand, within Dsui_1444 at 1499.976 kb on - strand at 1499.976 kb on - strand, within Dsui_1444 at 1499.986 kb on + strand, within Dsui_1444 at 1499.987 kb on + strand, within Dsui_1444 at 1500.040 kb on + strand, within Dsui_1444 at 1500.040 kb on + strand, within Dsui_1444 at 1500.058 kb on - strand, within Dsui_1444 at 1500.058 kb on - strand, within Dsui_1444 at 1500.069 kb on + strand, within Dsui_1444 at 1500.102 kb on - strand at 1500.193 kb on + strand at 1500.201 kb on - strand at 1500.201 kb on - strand at 1500.243 kb on - strand at 1500.249 kb on + strand at 1500.249 kb on + strand at 1500.312 kb on + strand at 1500.362 kb on - strand at 1500.643 kb on + strand, within Dsui_1445 at 1500.643 kb on + strand, within Dsui_1445 at 1500.643 kb on + strand, within Dsui_1445 at 1500.651 kb on - strand, within Dsui_1445 at 1500.770 kb on + strand, within Dsui_1445 at 1500.923 kb on - strand, within Dsui_1445 at 1501.115 kb on + strand, within Dsui_1445 at 1501.123 kb on - strand, within Dsui_1445 at 1501.229 kb on - strand, within Dsui_1445
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,498,791 + Dsui_1443 0.50 -1.7 1,498,825 + Dsui_1443 0.52 +1.1 1,498,833 - Dsui_1443 0.53 +0.5 1,499,021 + Dsui_1443 0.67 +1.8 1,499,251 + Dsui_1443 0.84 -0.3 1,499,277 + Dsui_1443 0.86 +1.0 1,499,331 - -0.5 1,499,662 - -0.3 1,499,828 + Dsui_1444 0.25 +0.3 1,499,864 + Dsui_1444 0.32 +0.4 1,499,929 + Dsui_1444 0.43 -0.5 1,499,939 + Dsui_1444 0.45 -0.1 1,499,939 + Dsui_1444 0.45 +0.4 1,499,939 + Dsui_1444 0.45 +0.2 1,499,939 + Dsui_1444 0.45 -0.2 1,499,968 + Dsui_1444 0.51 -0.2 1,499,968 + Dsui_1444 0.51 +0.3 1,499,976 - +2.3 1,499,976 - Dsui_1444 0.52 -2.0 1,499,986 + Dsui_1444 0.54 -0.5 1,499,987 + Dsui_1444 0.54 +0.5 1,500,040 + Dsui_1444 0.64 +1.6 1,500,040 + Dsui_1444 0.64 +0.1 1,500,058 - Dsui_1444 0.67 -1.3 1,500,058 - Dsui_1444 0.67 +0.6 1,500,069 + Dsui_1444 0.69 +0.0 1,500,102 - +0.3 1,500,193 + +0.2 1,500,201 - -0.5 1,500,201 - +0.3 1,500,243 - -1.0 1,500,249 + -0.4 1,500,249 + +0.2 1,500,312 + -0.5 1,500,362 - +0.1 1,500,643 + Dsui_1445 0.30 -1.7 1,500,643 + Dsui_1445 0.30 -0.9 1,500,643 + Dsui_1445 0.30 -1.3 1,500,651 - Dsui_1445 0.31 -0.0 1,500,770 + Dsui_1445 0.41 -1.0 1,500,923 - Dsui_1445 0.54 -1.7 1,501,115 + Dsui_1445 0.71 -2.1 1,501,123 - Dsui_1445 0.72 -1.9 1,501,229 - Dsui_1445 0.81 -1.7
Or see this region's nucleotide sequence