Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1261 and Dsui_1262 are separated by 140 nucleotides Dsui_1262 and Dsui_1263 are separated by 2 nucleotides Dsui_1263 and Dsui_1264 are separated by 320 nucleotides
Dsui_1261: Dsui_1261 - response regulator containing a CheY-like receiver domain and a GGDEF domain, at 1,324,552 to 1,325,352
_1261
Dsui_1262: Dsui_1262 - TRAP transporter, DctM subunit, at 1,325,493 to 1,326,959
_1262
Dsui_1263: Dsui_1263 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,326,962 to 1,327,549
_1263
Dsui_1264: Dsui_1264 - fructose-2,6-bisphosphatase, at 1,327,870 to 1,328,520
_1264
Position (kb)
1325
1326
1327 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1324.497 kb on - strand at 1324.509 kb on + strand at 1324.526 kb on - strand at 1324.548 kb on - strand at 1324.687 kb on + strand, within Dsui_1261 at 1324.696 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.802 kb on - strand, within Dsui_1261 at 1324.926 kb on - strand at 1324.985 kb on + strand, within Dsui_1261 at 1324.993 kb on - strand, within Dsui_1261 at 1325.069 kb on + strand, within Dsui_1261 at 1325.098 kb on - strand, within Dsui_1261 at 1325.111 kb on + strand, within Dsui_1261 at 1325.134 kb on - strand at 1325.218 kb on + strand, within Dsui_1261 at 1325.316 kb on + strand at 1325.316 kb on + strand at 1325.359 kb on - strand at 1325.364 kb on - strand at 1325.473 kb on + strand at 1325.507 kb on + strand at 1325.529 kb on + strand at 1325.537 kb on - strand at 1325.550 kb on + strand at 1325.550 kb on + strand at 1325.769 kb on + strand, within Dsui_1262 at 1325.806 kb on + strand, within Dsui_1262 at 1325.848 kb on - strand, within Dsui_1262 at 1325.911 kb on - strand, within Dsui_1262 at 1326.071 kb on + strand at 1326.071 kb on - strand, within Dsui_1262 at 1326.152 kb on + strand, within Dsui_1262 at 1326.161 kb on - strand, within Dsui_1262 at 1326.206 kb on - strand, within Dsui_1262 at 1326.254 kb on + strand at 1326.262 kb on - strand, within Dsui_1262 at 1326.325 kb on - strand, within Dsui_1262 at 1326.368 kb on + strand, within Dsui_1262 at 1326.376 kb on - strand, within Dsui_1262 at 1326.378 kb on + strand at 1326.569 kb on - strand, within Dsui_1262 at 1326.569 kb on - strand, within Dsui_1262 at 1326.574 kb on - strand, within Dsui_1262 at 1326.642 kb on + strand, within Dsui_1262 at 1326.645 kb on - strand, within Dsui_1262 at 1326.650 kb on - strand, within Dsui_1262 at 1326.650 kb on - strand, within Dsui_1262 at 1326.690 kb on - strand, within Dsui_1262 at 1326.714 kb on + strand at 1326.722 kb on - strand, within Dsui_1262 at 1326.722 kb on - strand, within Dsui_1262 at 1326.804 kb on + strand, within Dsui_1262 at 1326.807 kb on - strand, within Dsui_1262 at 1326.814 kb on + strand at 1326.822 kb on - strand at 1326.822 kb on - strand at 1326.833 kb on - strand at 1326.910 kb on - strand at 1327.094 kb on - strand, within Dsui_1263 at 1327.108 kb on + strand, within Dsui_1263 at 1327.206 kb on + strand at 1327.206 kb on + strand, within Dsui_1263 at 1327.206 kb on + strand at 1327.214 kb on - strand, within Dsui_1263 at 1327.216 kb on + strand, within Dsui_1263 at 1327.233 kb on + strand, within Dsui_1263 at 1327.241 kb on - strand, within Dsui_1263 at 1327.265 kb on - strand, within Dsui_1263 at 1327.342 kb on + strand, within Dsui_1263 at 1327.347 kb on - strand, within Dsui_1263 at 1327.350 kb on - strand, within Dsui_1263 at 1327.389 kb on - strand, within Dsui_1263 at 1327.438 kb on - strand, within Dsui_1263 at 1327.471 kb on + strand, within Dsui_1263 at 1327.489 kb on - strand, within Dsui_1263 at 1327.537 kb on + strand at 1327.552 kb on - strand at 1327.566 kb on - strand at 1327.617 kb on + strand at 1327.663 kb on + strand at 1327.671 kb on - strand at 1327.729 kb on + strand at 1327.841 kb on + strand at 1327.852 kb on + strand at 1327.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,324,497 - +1.0 1,324,509 + +0.7 1,324,526 - +0.4 1,324,548 - -0.6 1,324,687 + Dsui_1261 0.17 -0.4 1,324,696 + Dsui_1261 0.18 -0.1 1,324,767 + Dsui_1261 0.27 +1.1 1,324,767 + Dsui_1261 0.27 -0.1 1,324,775 - Dsui_1261 0.28 -0.7 1,324,775 - Dsui_1261 0.28 -0.6 1,324,775 - Dsui_1261 0.28 +0.2 1,324,802 - Dsui_1261 0.31 +0.3 1,324,926 - +0.2 1,324,985 + Dsui_1261 0.54 +0.4 1,324,993 - Dsui_1261 0.55 +0.2 1,325,069 + Dsui_1261 0.65 +1.0 1,325,098 - Dsui_1261 0.68 -1.4 1,325,111 + Dsui_1261 0.70 -0.9 1,325,134 - +1.3 1,325,218 + Dsui_1261 0.83 +0.3 1,325,316 + -0.3 1,325,316 + -1.3 1,325,359 - -0.7 1,325,364 - -0.9 1,325,473 + -0.5 1,325,507 + +0.3 1,325,529 + +0.6 1,325,537 - +0.3 1,325,550 + +0.4 1,325,550 + +1.2 1,325,769 + Dsui_1262 0.19 +0.5 1,325,806 + Dsui_1262 0.21 +2.5 1,325,848 - Dsui_1262 0.24 +1.8 1,325,911 - Dsui_1262 0.28 +1.0 1,326,071 + +0.0 1,326,071 - Dsui_1262 0.39 +1.7 1,326,152 + Dsui_1262 0.45 +0.7 1,326,161 - Dsui_1262 0.46 +1.7 1,326,206 - Dsui_1262 0.49 +1.0 1,326,254 + +0.0 1,326,262 - Dsui_1262 0.52 +1.2 1,326,325 - Dsui_1262 0.57 -0.8 1,326,368 + Dsui_1262 0.60 +0.6 1,326,376 - Dsui_1262 0.60 +0.1 1,326,378 + +0.3 1,326,569 - Dsui_1262 0.73 +0.6 1,326,569 - Dsui_1262 0.73 +0.1 1,326,574 - Dsui_1262 0.74 +1.6 1,326,642 + Dsui_1262 0.78 +0.7 1,326,645 - Dsui_1262 0.79 +1.1 1,326,650 - Dsui_1262 0.79 +0.7 1,326,650 - Dsui_1262 0.79 +0.4 1,326,690 - Dsui_1262 0.82 -0.5 1,326,714 + +3.3 1,326,722 - Dsui_1262 0.84 +1.2 1,326,722 - Dsui_1262 0.84 +1.4 1,326,804 + Dsui_1262 0.89 +0.7 1,326,807 - Dsui_1262 0.90 +0.8 1,326,814 + +2.3 1,326,822 - +0.8 1,326,822 - +0.8 1,326,833 - +0.9 1,326,910 - +0.7 1,327,094 - Dsui_1263 0.22 +0.4 1,327,108 + Dsui_1263 0.25 -1.2 1,327,206 + +1.3 1,327,206 + Dsui_1263 0.41 +1.3 1,327,206 + +2.9 1,327,214 - Dsui_1263 0.43 +1.2 1,327,216 + Dsui_1263 0.43 +0.8 1,327,233 + Dsui_1263 0.46 +1.7 1,327,241 - Dsui_1263 0.47 +0.5 1,327,265 - Dsui_1263 0.52 +0.9 1,327,342 + Dsui_1263 0.65 +1.3 1,327,347 - Dsui_1263 0.65 +2.4 1,327,350 - Dsui_1263 0.66 +1.0 1,327,389 - Dsui_1263 0.73 +1.6 1,327,438 - Dsui_1263 0.81 +0.9 1,327,471 + Dsui_1263 0.87 +2.2 1,327,489 - Dsui_1263 0.90 +0.6 1,327,537 + +1.2 1,327,552 - +1.2 1,327,566 - +0.8 1,327,617 + +0.2 1,327,663 + +1.1 1,327,671 - +0.2 1,327,729 + +0.8 1,327,841 + -0.5 1,327,852 + +1.7 1,327,860 - +0.3
Or see this region's nucleotide sequence