Strain Fitness in Dechlorosoma suillum PS around Dsui_1262

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1261 and Dsui_1262 are separated by 140 nucleotidesDsui_1262 and Dsui_1263 are separated by 2 nucleotidesDsui_1263 and Dsui_1264 are separated by 320 nucleotides Dsui_1261: Dsui_1261 - response regulator containing a CheY-like receiver domain and a GGDEF domain, at 1,324,552 to 1,325,352 _1261 Dsui_1262: Dsui_1262 - TRAP transporter, DctM subunit, at 1,325,493 to 1,326,959 _1262 Dsui_1263: Dsui_1263 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,326,962 to 1,327,549 _1263 Dsui_1264: Dsui_1264 - fructose-2,6-bisphosphatase, at 1,327,870 to 1,328,520 _1264 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -1 0 1 2 3at 1324.497 kb on - strandat 1324.509 kb on + strandat 1324.526 kb on - strandat 1324.548 kb on - strandat 1324.687 kb on + strand, within Dsui_1261at 1324.696 kb on + strand, within Dsui_1261at 1324.767 kb on + strand, within Dsui_1261at 1324.767 kb on + strand, within Dsui_1261at 1324.775 kb on - strand, within Dsui_1261at 1324.775 kb on - strand, within Dsui_1261at 1324.775 kb on - strand, within Dsui_1261at 1324.802 kb on - strand, within Dsui_1261at 1324.926 kb on - strandat 1324.985 kb on + strand, within Dsui_1261at 1324.993 kb on - strand, within Dsui_1261at 1325.069 kb on + strand, within Dsui_1261at 1325.098 kb on - strand, within Dsui_1261at 1325.111 kb on + strand, within Dsui_1261at 1325.134 kb on - strandat 1325.218 kb on + strand, within Dsui_1261at 1325.316 kb on + strandat 1325.316 kb on + strandat 1325.359 kb on - strandat 1325.364 kb on - strandat 1325.473 kb on + strandat 1325.507 kb on + strandat 1325.529 kb on + strandat 1325.537 kb on - strandat 1325.550 kb on + strandat 1325.550 kb on + strandat 1325.769 kb on + strand, within Dsui_1262at 1325.806 kb on + strand, within Dsui_1262at 1325.848 kb on - strand, within Dsui_1262at 1325.911 kb on - strand, within Dsui_1262at 1326.071 kb on + strandat 1326.071 kb on - strand, within Dsui_1262at 1326.152 kb on + strand, within Dsui_1262at 1326.161 kb on - strand, within Dsui_1262at 1326.206 kb on - strand, within Dsui_1262at 1326.254 kb on + strandat 1326.262 kb on - strand, within Dsui_1262at 1326.325 kb on - strand, within Dsui_1262at 1326.368 kb on + strand, within Dsui_1262at 1326.376 kb on - strand, within Dsui_1262at 1326.378 kb on + strandat 1326.569 kb on - strand, within Dsui_1262at 1326.569 kb on - strand, within Dsui_1262at 1326.574 kb on - strand, within Dsui_1262at 1326.642 kb on + strand, within Dsui_1262at 1326.645 kb on - strand, within Dsui_1262at 1326.650 kb on - strand, within Dsui_1262at 1326.650 kb on - strand, within Dsui_1262at 1326.690 kb on - strand, within Dsui_1262at 1326.714 kb on + strandat 1326.722 kb on - strand, within Dsui_1262at 1326.722 kb on - strand, within Dsui_1262at 1326.804 kb on + strand, within Dsui_1262at 1326.807 kb on - strand, within Dsui_1262at 1326.814 kb on + strandat 1326.822 kb on - strandat 1326.822 kb on - strandat 1326.833 kb on - strandat 1326.910 kb on - strandat 1327.094 kb on - strand, within Dsui_1263at 1327.108 kb on + strand, within Dsui_1263at 1327.206 kb on + strandat 1327.206 kb on + strand, within Dsui_1263at 1327.206 kb on + strandat 1327.214 kb on - strand, within Dsui_1263at 1327.216 kb on + strand, within Dsui_1263at 1327.233 kb on + strand, within Dsui_1263at 1327.241 kb on - strand, within Dsui_1263at 1327.265 kb on - strand, within Dsui_1263at 1327.342 kb on + strand, within Dsui_1263at 1327.347 kb on - strand, within Dsui_1263at 1327.350 kb on - strand, within Dsui_1263at 1327.389 kb on - strand, within Dsui_1263at 1327.438 kb on - strand, within Dsui_1263at 1327.471 kb on + strand, within Dsui_1263at 1327.489 kb on - strand, within Dsui_1263at 1327.537 kb on + strandat 1327.552 kb on - strandat 1327.566 kb on - strandat 1327.617 kb on + strandat 1327.663 kb on + strandat 1327.671 kb on - strandat 1327.729 kb on + strandat 1327.841 kb on + strandat 1327.852 kb on + strandat 1327.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,324,497 - +1.0
1,324,509 + +0.7
1,324,526 - +0.4
1,324,548 - -0.6
1,324,687 + Dsui_1261 0.17 -0.4
1,324,696 + Dsui_1261 0.18 -0.1
1,324,767 + Dsui_1261 0.27 +1.1
1,324,767 + Dsui_1261 0.27 -0.1
1,324,775 - Dsui_1261 0.28 -0.7
1,324,775 - Dsui_1261 0.28 -0.6
1,324,775 - Dsui_1261 0.28 +0.2
1,324,802 - Dsui_1261 0.31 +0.3
1,324,926 - +0.2
1,324,985 + Dsui_1261 0.54 +0.4
1,324,993 - Dsui_1261 0.55 +0.2
1,325,069 + Dsui_1261 0.65 +1.0
1,325,098 - Dsui_1261 0.68 -1.4
1,325,111 + Dsui_1261 0.70 -0.9
1,325,134 - +1.3
1,325,218 + Dsui_1261 0.83 +0.3
1,325,316 + -0.3
1,325,316 + -1.3
1,325,359 - -0.7
1,325,364 - -0.9
1,325,473 + -0.5
1,325,507 + +0.3
1,325,529 + +0.6
1,325,537 - +0.3
1,325,550 + +0.4
1,325,550 + +1.2
1,325,769 + Dsui_1262 0.19 +0.5
1,325,806 + Dsui_1262 0.21 +2.5
1,325,848 - Dsui_1262 0.24 +1.8
1,325,911 - Dsui_1262 0.28 +1.0
1,326,071 + +0.0
1,326,071 - Dsui_1262 0.39 +1.7
1,326,152 + Dsui_1262 0.45 +0.7
1,326,161 - Dsui_1262 0.46 +1.7
1,326,206 - Dsui_1262 0.49 +1.0
1,326,254 + +0.0
1,326,262 - Dsui_1262 0.52 +1.2
1,326,325 - Dsui_1262 0.57 -0.8
1,326,368 + Dsui_1262 0.60 +0.6
1,326,376 - Dsui_1262 0.60 +0.1
1,326,378 + +0.3
1,326,569 - Dsui_1262 0.73 +0.6
1,326,569 - Dsui_1262 0.73 +0.1
1,326,574 - Dsui_1262 0.74 +1.6
1,326,642 + Dsui_1262 0.78 +0.7
1,326,645 - Dsui_1262 0.79 +1.1
1,326,650 - Dsui_1262 0.79 +0.7
1,326,650 - Dsui_1262 0.79 +0.4
1,326,690 - Dsui_1262 0.82 -0.5
1,326,714 + +3.3
1,326,722 - Dsui_1262 0.84 +1.2
1,326,722 - Dsui_1262 0.84 +1.4
1,326,804 + Dsui_1262 0.89 +0.7
1,326,807 - Dsui_1262 0.90 +0.8
1,326,814 + +2.3
1,326,822 - +0.8
1,326,822 - +0.8
1,326,833 - +0.9
1,326,910 - +0.7
1,327,094 - Dsui_1263 0.22 +0.4
1,327,108 + Dsui_1263 0.25 -1.2
1,327,206 + +1.3
1,327,206 + Dsui_1263 0.41 +1.3
1,327,206 + +2.9
1,327,214 - Dsui_1263 0.43 +1.2
1,327,216 + Dsui_1263 0.43 +0.8
1,327,233 + Dsui_1263 0.46 +1.7
1,327,241 - Dsui_1263 0.47 +0.5
1,327,265 - Dsui_1263 0.52 +0.9
1,327,342 + Dsui_1263 0.65 +1.3
1,327,347 - Dsui_1263 0.65 +2.4
1,327,350 - Dsui_1263 0.66 +1.0
1,327,389 - Dsui_1263 0.73 +1.6
1,327,438 - Dsui_1263 0.81 +0.9
1,327,471 + Dsui_1263 0.87 +2.2
1,327,489 - Dsui_1263 0.90 +0.6
1,327,537 + +1.2
1,327,552 - +1.2
1,327,566 - +0.8
1,327,617 + +0.2
1,327,663 + +1.1
1,327,671 - +0.2
1,327,729 + +0.8
1,327,841 + -0.5
1,327,852 + +1.7
1,327,860 - +0.3

Or see this region's nucleotide sequence