Strain Fitness in Dechlorosoma suillum PS around Dsui_1121

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1119 and Dsui_1120 overlap by 4 nucleotidesDsui_1120 and Dsui_1121 are separated by 101 nucleotidesDsui_1121 and Dsui_1122 are separated by 195 nucleotides Dsui_1119: Dsui_1119 - glutathione peroxidase, at 1,166,994 to 1,167,482 _1119 Dsui_1120: Dsui_1120 - uncharacterized protein SCO1/SenC/PrrC, at 1,167,479 to 1,168,063 _1120 Dsui_1121: Dsui_1121 - alternative sigma factor RpoH, at 1,168,165 to 1,169,022 _1121 Dsui_1122: Dsui_1122 - dihydroxy-acid dehydratase, at 1,169,218 to 1,171,077 _1122 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -3 -2 -1 0 1at 1167.168 kb on + strand, within Dsui_1119at 1167.325 kb on + strand, within Dsui_1119at 1167.327 kb on - strand, within Dsui_1119at 1167.408 kb on - strand, within Dsui_1119at 1167.493 kb on + strandat 1167.508 kb on + strandat 1167.731 kb on + strand, within Dsui_1120at 1167.732 kb on + strand, within Dsui_1120at 1167.795 kb on + strand, within Dsui_1120at 1167.855 kb on - strand, within Dsui_1120at 1167.931 kb on + strand, within Dsui_1120at 1167.939 kb on - strand, within Dsui_1120at 1168.010 kb on + strandat 1169.005 kb on + strandat 1169.013 kb on - strandat 1169.034 kb on + strandat 1169.055 kb on + strandat 1169.063 kb on - strandat 1169.063 kb on - strandat 1169.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,167,168 + Dsui_1119 0.36 -1.0
1,167,325 + Dsui_1119 0.68 -1.5
1,167,327 - Dsui_1119 0.68 +0.9
1,167,408 - Dsui_1119 0.85 -0.8
1,167,493 + -0.7
1,167,508 + -0.2
1,167,731 + Dsui_1120 0.43 +0.8
1,167,732 + Dsui_1120 0.43 -0.3
1,167,795 + Dsui_1120 0.54 +0.5
1,167,855 - Dsui_1120 0.64 -3.5
1,167,931 + Dsui_1120 0.77 +0.2
1,167,939 - Dsui_1120 0.79 -1.2
1,168,010 + +0.1
1,169,005 + -1.8
1,169,013 - -2.9
1,169,034 + +0.6
1,169,055 + -0.2
1,169,063 - -0.3
1,169,063 - -0.5
1,169,077 + +0.1

Or see this region's nucleotide sequence