Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0862 and Dsui_0863 are separated by 154 nucleotides Dsui_0863 and Dsui_0864 are separated by 40 nucleotides Dsui_0864 and Dsui_0865 are separated by 16 nucleotides
Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414
_0862
Dsui_0863: Dsui_0863 - phosphate regulon transcriptional regulatory protein PhoB, at 877,569 to 878,261
_0863
Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603
_0864
Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233
_0865
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 877.412 kb on - strand at 877.424 kb on - strand at 877.442 kb on + strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.466 kb on + strand at 877.481 kb on - strand at 877.528 kb on + strand at 877.532 kb on - strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.556 kb on - strand at 877.558 kb on + strand at 877.572 kb on - strand at 877.575 kb on + strand at 877.591 kb on + strand at 877.602 kb on + strand at 877.610 kb on - strand at 877.645 kb on + strand, within Dsui_0863 at 877.649 kb on - strand, within Dsui_0863 at 877.716 kb on + strand, within Dsui_0863 at 877.787 kb on + strand, within Dsui_0863 at 877.812 kb on - strand at 877.850 kb on + strand, within Dsui_0863 at 877.850 kb on + strand, within Dsui_0863 at 877.913 kb on + strand, within Dsui_0863 at 877.915 kb on - strand, within Dsui_0863 at 877.918 kb on + strand, within Dsui_0863 at 877.931 kb on - strand at 877.950 kb on + strand, within Dsui_0863 at 878.038 kb on - strand, within Dsui_0863 at 878.045 kb on + strand, within Dsui_0863 at 878.114 kb on + strand, within Dsui_0863 at 878.114 kb on + strand, within Dsui_0863 at 878.122 kb on - strand, within Dsui_0863 at 878.122 kb on - strand, within Dsui_0863 at 878.157 kb on + strand, within Dsui_0863 at 878.157 kb on - strand at 878.189 kb on - strand, within Dsui_0863 at 878.210 kb on + strand at 878.228 kb on - strand at 878.312 kb on - strand at 878.346 kb on + strand at 878.358 kb on + strand at 878.424 kb on + strand at 878.432 kb on - strand at 878.468 kb on - strand at 878.536 kb on + strand, within Dsui_0864 at 878.633 kb on + strand, within Dsui_0864 at 878.699 kb on + strand, within Dsui_0864 at 878.777 kb on - strand, within Dsui_0864 at 878.817 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.891 kb on + strand, within Dsui_0864 at 878.906 kb on - strand, within Dsui_0864 at 878.962 kb on + strand, within Dsui_0864 at 879.041 kb on + strand, within Dsui_0864 at 879.042 kb on - strand, within Dsui_0864 at 879.049 kb on - strand, within Dsui_0864 at 879.061 kb on + strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.086 kb on + strand, within Dsui_0864 at 879.178 kb on - strand, within Dsui_0864 at 879.195 kb on - strand at 879.200 kb on + strand, within Dsui_0864 at 879.260 kb on + strand, within Dsui_0864 at 879.353 kb on + strand, within Dsui_0864 at 879.410 kb on + strand, within Dsui_0864 at 879.419 kb on + strand, within Dsui_0864 at 879.504 kb on + strand at 879.554 kb on - strand at 879.569 kb on - strand at 879.584 kb on - strand at 879.588 kb on + strand at 879.631 kb on + strand at 879.631 kb on + strand at 879.663 kb on + strand at 879.671 kb on - strand at 879.746 kb on + strand at 879.759 kb on - strand at 879.800 kb on + strand, within Dsui_0865 at 879.858 kb on + strand, within Dsui_0865 at 879.888 kb on - strand, within Dsui_0865 at 880.094 kb on - strand, within Dsui_0865 at 880.178 kb on - strand at 880.231 kb on - strand, within Dsui_0865 at 880.286 kb on + strand at 880.333 kb on + strand at 880.402 kb on - strand, within Dsui_0865 at 880.581 kb on + strand, within Dsui_0865
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 877,412 - -0.6 877,424 - +0.8 877,442 + -0.5 877,463 - -0.4 877,463 - +1.7 877,463 - +0.3 877,463 - +0.2 877,466 + +2.5 877,481 - +0.4 877,528 + +0.9 877,532 - +1.1 877,548 + +0.7 877,548 + -0.1 877,548 + -0.6 877,548 + +1.2 877,556 - +3.2 877,558 + +0.1 877,572 - -0.0 877,575 + +1.3 877,591 + -0.6 877,602 + -0.0 877,610 - +1.2 877,645 + Dsui_0863 0.11 +0.7 877,649 - Dsui_0863 0.12 -0.8 877,716 + Dsui_0863 0.21 -0.1 877,787 + Dsui_0863 0.31 +0.2 877,812 - +3.8 877,850 + Dsui_0863 0.41 -0.1 877,850 + Dsui_0863 0.41 +0.9 877,913 + Dsui_0863 0.50 +0.2 877,915 - Dsui_0863 0.50 +0.5 877,918 + Dsui_0863 0.50 -0.1 877,931 - +0.2 877,950 + Dsui_0863 0.55 +0.0 878,038 - Dsui_0863 0.68 +0.2 878,045 + Dsui_0863 0.69 -1.3 878,114 + Dsui_0863 0.79 -0.4 878,114 + Dsui_0863 0.79 +0.2 878,122 - Dsui_0863 0.80 -0.7 878,122 - Dsui_0863 0.80 +0.8 878,157 + Dsui_0863 0.85 -0.1 878,157 - +0.9 878,189 - Dsui_0863 0.89 +0.3 878,210 + -2.0 878,228 - +0.3 878,312 - +0.4 878,346 + +1.2 878,358 + +2.0 878,424 + -0.1 878,432 - +1.2 878,468 - +1.8 878,536 + Dsui_0864 0.18 +0.3 878,633 + Dsui_0864 0.25 +1.7 878,699 + Dsui_0864 0.30 +1.0 878,777 - Dsui_0864 0.36 -0.1 878,817 + Dsui_0864 0.40 +0.9 878,824 + Dsui_0864 0.40 -1.2 878,824 + Dsui_0864 0.40 +0.4 878,872 - Dsui_0864 0.44 +0.7 878,872 - Dsui_0864 0.44 +0.6 878,891 + Dsui_0864 0.45 +0.5 878,906 - Dsui_0864 0.46 +0.2 878,962 + Dsui_0864 0.51 +0.4 879,041 + Dsui_0864 0.57 +0.1 879,042 - Dsui_0864 0.57 +0.8 879,049 - Dsui_0864 0.57 +1.1 879,061 + Dsui_0864 0.58 +0.9 879,071 - Dsui_0864 0.59 +0.3 879,071 - Dsui_0864 0.59 +1.7 879,086 + Dsui_0864 0.60 +0.6 879,178 - Dsui_0864 0.67 +0.2 879,195 - +3.2 879,200 + Dsui_0864 0.69 +0.1 879,260 + Dsui_0864 0.74 -0.3 879,353 + Dsui_0864 0.81 +0.3 879,410 + Dsui_0864 0.85 +0.1 879,419 + Dsui_0864 0.86 +1.2 879,504 + +0.1 879,554 - +0.9 879,569 - +0.3 879,584 - +0.2 879,588 + -0.1 879,631 + -0.9 879,631 + +2.2 879,663 + -0.6 879,671 - +1.7 879,746 + +0.1 879,759 - -1.5 879,800 + Dsui_0865 0.11 -0.1 879,858 + Dsui_0865 0.15 +0.5 879,888 - Dsui_0865 0.17 +0.1 880,094 - Dsui_0865 0.29 -0.6 880,178 - -0.3 880,231 - Dsui_0865 0.38 -0.2 880,286 + +0.7 880,333 + +1.2 880,402 - Dsui_0865 0.48 +1.5 880,581 + Dsui_0865 0.60 -1.0
Or see this region's nucleotide sequence