Strain Fitness in Dechlorosoma suillum PS around Dsui_0708

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0707 and Dsui_0708 are separated by 124 nucleotidesDsui_0708 and Dsui_0709 are separated by 64 nucleotidesDsui_0709 and Dsui_0710 are separated by 54 nucleotides Dsui_0707: Dsui_0707 - protein RecA, at 701,577 to 702,599 _0707 Dsui_0708: Dsui_0708 - PAS domain S-box, at 702,724 to 704,817 _0708 Dsui_0709: Dsui_0709 - bacterioferritin, at 704,882 to 705,361 _0709 Dsui_0710: Dsui_0710 - competence/damage-inducible protein CinA-like protein, at 705,416 to 705,931 _0710 Position (kb) 702 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 701.872 kb on - strand, within Dsui_0707at 702.020 kb on + strand, within Dsui_0707at 702.046 kb on - strand, within Dsui_0707at 702.067 kb on + strandat 702.085 kb on - strand, within Dsui_0707at 702.190 kb on - strand, within Dsui_0707at 702.344 kb on + strandat 702.380 kb on - strand, within Dsui_0707at 702.393 kb on + strand, within Dsui_0707at 702.469 kb on - strand, within Dsui_0707at 702.585 kb on - strandat 702.634 kb on + strandat 702.665 kb on - strandat 702.673 kb on + strandat 702.774 kb on + strandat 702.798 kb on + strandat 702.890 kb on - strandat 702.966 kb on - strand, within Dsui_0708at 702.978 kb on - strand, within Dsui_0708at 702.978 kb on - strand, within Dsui_0708at 702.995 kb on + strand, within Dsui_0708at 703.073 kb on + strand, within Dsui_0708at 703.081 kb on - strandat 703.207 kb on - strandat 703.235 kb on + strand, within Dsui_0708at 703.235 kb on + strand, within Dsui_0708at 703.315 kb on + strand, within Dsui_0708at 703.318 kb on - strandat 703.363 kb on + strand, within Dsui_0708at 703.366 kb on - strandat 703.436 kb on - strand, within Dsui_0708at 703.489 kb on - strandat 703.489 kb on - strand, within Dsui_0708at 703.525 kb on + strand, within Dsui_0708at 703.533 kb on - strand, within Dsui_0708at 703.562 kb on + strand, within Dsui_0708at 703.579 kb on - strandat 703.593 kb on - strand, within Dsui_0708at 703.682 kb on + strand, within Dsui_0708at 703.698 kb on + strand, within Dsui_0708at 703.724 kb on - strand, within Dsui_0708at 703.771 kb on - strandat 703.969 kb on - strand, within Dsui_0708at 703.988 kb on - strand, within Dsui_0708at 703.997 kb on + strand, within Dsui_0708at 704.093 kb on + strandat 704.142 kb on - strand, within Dsui_0708at 704.190 kb on + strand, within Dsui_0708at 704.199 kb on - strandat 704.211 kb on + strand, within Dsui_0708at 704.226 kb on + strand, within Dsui_0708at 704.234 kb on - strand, within Dsui_0708at 704.338 kb on + strand, within Dsui_0708at 704.423 kb on - strandat 704.428 kb on - strand, within Dsui_0708at 704.485 kb on + strand, within Dsui_0708at 704.527 kb on - strand, within Dsui_0708at 704.548 kb on - strand, within Dsui_0708at 704.560 kb on - strandat 704.560 kb on - strand, within Dsui_0708at 704.595 kb on + strand, within Dsui_0708at 704.614 kb on - strandat 704.632 kb on - strandat 704.701 kb on - strandat 704.763 kb on - strandat 704.764 kb on - strandat 704.821 kb on + strandat 705.026 kb on - strand, within Dsui_0709at 705.078 kb on - strand, within Dsui_0709at 705.162 kb on + strand, within Dsui_0709at 705.175 kb on + strand, within Dsui_0709at 705.180 kb on + strand, within Dsui_0709at 705.324 kb on + strandat 705.334 kb on + strandat 705.414 kb on + strandat 705.535 kb on - strand, within Dsui_0710at 705.541 kb on - strand, within Dsui_0710at 705.654 kb on + strand, within Dsui_0710at 705.715 kb on - strand, within Dsui_0710at 705.786 kb on - strand, within Dsui_0710

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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701,872 - Dsui_0707 0.29 +2.2
702,020 + Dsui_0707 0.43 -0.6
702,046 - Dsui_0707 0.46 +2.2
702,067 + +2.8
702,085 - Dsui_0707 0.50 -1.0
702,190 - Dsui_0707 0.60 -0.5
702,344 + -0.4
702,380 - Dsui_0707 0.78 +0.2
702,393 + Dsui_0707 0.80 -1.5
702,469 - Dsui_0707 0.87 +2.2
702,585 - +0.4
702,634 + +1.2
702,665 - +0.2
702,673 + +0.6
702,774 + -0.8
702,798 + +2.2
702,890 - +1.6
702,966 - Dsui_0708 0.12 +0.2
702,978 - Dsui_0708 0.12 +0.5
702,978 - Dsui_0708 0.12 -0.2
702,995 + Dsui_0708 0.13 +2.8
703,073 + Dsui_0708 0.17 -0.4
703,081 - +0.6
703,207 - +0.6
703,235 + Dsui_0708 0.24 -0.4
703,235 + Dsui_0708 0.24 +0.6
703,315 + Dsui_0708 0.28 -1.8
703,318 - +0.6
703,363 + Dsui_0708 0.31 +1.2
703,366 - +1.4
703,436 - Dsui_0708 0.34 +1.0
703,489 - +1.4
703,489 - Dsui_0708 0.37 -0.4
703,525 + Dsui_0708 0.38 +0.1
703,533 - Dsui_0708 0.39 -0.1
703,562 + Dsui_0708 0.40 +0.3
703,579 - -0.1
703,593 - Dsui_0708 0.41 +0.2
703,682 + Dsui_0708 0.46 +1.1
703,698 + Dsui_0708 0.47 -0.7
703,724 - Dsui_0708 0.48 -1.0
703,771 - +0.6
703,969 - Dsui_0708 0.59 +0.5
703,988 - Dsui_0708 0.60 +0.2
703,997 + Dsui_0708 0.61 +0.1
704,093 + +2.2
704,142 - Dsui_0708 0.68 -0.3
704,190 + Dsui_0708 0.70 +0.0
704,199 - +1.6
704,211 + Dsui_0708 0.71 +0.4
704,226 + Dsui_0708 0.72 -0.5
704,234 - Dsui_0708 0.72 +0.4
704,338 + Dsui_0708 0.77 -0.2
704,423 - -0.1
704,428 - Dsui_0708 0.81 +1.9
704,485 + Dsui_0708 0.84 -0.6
704,527 - Dsui_0708 0.86 -1.4
704,548 - Dsui_0708 0.87 +1.9
704,560 - +0.2
704,560 - Dsui_0708 0.88 +1.4
704,595 + Dsui_0708 0.89 -0.0
704,614 - +0.9
704,632 - +0.6
704,701 - +0.1
704,763 - +1.0
704,764 - +1.8
704,821 + +0.3
705,026 - Dsui_0709 0.30 -0.8
705,078 - Dsui_0709 0.41 +0.0
705,162 + Dsui_0709 0.58 +0.8
705,175 + Dsui_0709 0.61 -1.3
705,180 + Dsui_0709 0.62 +0.3
705,324 + +0.2
705,334 + +2.2
705,414 + +0.6
705,535 - Dsui_0710 0.23 -0.6
705,541 - Dsui_0710 0.24 -1.3
705,654 + Dsui_0710 0.46 -1.6
705,715 - Dsui_0710 0.58 +0.2
705,786 - Dsui_0710 0.72 +1.3

Or see this region's nucleotide sequence