Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0263 and Dsui_0264 are separated by 118 nucleotides Dsui_0264 and Dsui_0265 are separated by 74 nucleotides Dsui_0265 and Dsui_0266 overlap by 35 nucleotides
Dsui_0263: Dsui_0263 - cytochrome c peroxidase, at 262,796 to 263,830
_0263
Dsui_0264: Dsui_0264 - tRNA-Phe, at 263,949 to 264,024
_0264
Dsui_0265: Dsui_0265 - signal transduction histidine kinase, at 264,099 to 265,634
_0265
Dsui_0266: Dsui_0266 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 265,600 to 266,283
_0266
Position (kb) 264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 263.250 kb on + strand, within Dsui_0263 at 263.256 kb on + strand at 263.339 kb on - strand, within Dsui_0263 at 263.388 kb on + strand, within Dsui_0263 at 263.396 kb on - strand, within Dsui_0263 at 263.451 kb on + strand, within Dsui_0263 at 263.523 kb on + strand at 263.566 kb on - strand, within Dsui_0263 at 263.665 kb on + strand, within Dsui_0263 at 263.702 kb on + strand at 263.784 kb on - strand at 263.786 kb on - strand at 263.827 kb on + strand at 263.835 kb on - strand at 263.927 kb on - strand at 264.072 kb on - strand at 264.072 kb on - strand at 264.104 kb on - strand at 264.119 kb on + strand at 264.154 kb on + strand at 264.164 kb on + strand at 264.164 kb on + strand at 264.176 kb on + strand at 264.243 kb on + strand at 264.243 kb on + strand at 264.252 kb on - strand at 264.355 kb on - strand, within Dsui_0265 at 264.364 kb on - strand, within Dsui_0265 at 264.445 kb on - strand, within Dsui_0265 at 264.466 kb on + strand, within Dsui_0265 at 264.520 kb on - strand, within Dsui_0265 at 264.554 kb on + strand, within Dsui_0265 at 264.679 kb on + strand, within Dsui_0265 at 264.718 kb on + strand, within Dsui_0265 at 264.764 kb on + strand, within Dsui_0265 at 264.813 kb on + strand, within Dsui_0265 at 264.988 kb on + strand, within Dsui_0265 at 265.028 kb on + strand, within Dsui_0265 at 265.041 kb on - strand, within Dsui_0265 at 265.079 kb on + strand, within Dsui_0265 at 265.087 kb on - strand, within Dsui_0265 at 265.104 kb on + strand, within Dsui_0265 at 265.121 kb on + strand, within Dsui_0265 at 265.205 kb on + strand, within Dsui_0265 at 265.264 kb on - strand, within Dsui_0265 at 265.413 kb on + strand at 265.464 kb on + strand, within Dsui_0265 at 265.656 kb on + strand at 265.713 kb on + strand, within Dsui_0266 at 265.713 kb on - strand, within Dsui_0266 at 265.756 kb on - strand, within Dsui_0266 at 265.882 kb on + strand, within Dsui_0266 at 265.896 kb on - strand, within Dsui_0266 at 265.933 kb on - strand, within Dsui_0266 at 265.942 kb on + strand, within Dsui_0266 at 265.986 kb on - strand, within Dsui_0266 at 266.015 kb on + strand, within Dsui_0266 at 266.015 kb on - strand, within Dsui_0266 at 266.023 kb on - strand, within Dsui_0266 at 266.048 kb on + strand, within Dsui_0266 at 266.081 kb on - strand, within Dsui_0266 at 266.132 kb on - strand, within Dsui_0266 at 266.135 kb on + strand at 266.138 kb on - strand, within Dsui_0266 at 266.224 kb on - strand at 266.287 kb on + strand at 266.297 kb on - strand at 266.328 kb on + strand at 266.328 kb on + strand at 266.336 kb on - strand at 266.361 kb on - strand at 266.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 263,250 + Dsui_0263 0.44 -1.9 263,256 + +0.7 263,339 - Dsui_0263 0.52 +0.1 263,388 + Dsui_0263 0.57 -0.4 263,396 - Dsui_0263 0.58 +0.3 263,451 + Dsui_0263 0.63 -1.4 263,523 + +1.3 263,566 - Dsui_0263 0.74 +0.7 263,665 + Dsui_0263 0.84 +0.6 263,702 + +0.5 263,784 - -0.3 263,786 - -0.6 263,827 + -0.1 263,835 - -0.4 263,927 - +2.3 264,072 - -0.4 264,072 - +1.1 264,104 - -0.3 264,119 + +0.1 264,154 + +0.1 264,164 + +1.3 264,164 + -3.4 264,176 + -0.3 264,243 + +0.1 264,243 + +1.1 264,252 - +0.2 264,355 - Dsui_0265 0.17 -0.5 264,364 - Dsui_0265 0.17 -1.1 264,445 - Dsui_0265 0.23 -0.1 264,466 + Dsui_0265 0.24 +0.2 264,520 - Dsui_0265 0.27 +0.5 264,554 + Dsui_0265 0.30 +1.3 264,679 + Dsui_0265 0.38 +0.8 264,718 + Dsui_0265 0.40 -1.1 264,764 + Dsui_0265 0.43 -0.3 264,813 + Dsui_0265 0.46 +0.7 264,988 + Dsui_0265 0.58 -0.1 265,028 + Dsui_0265 0.60 -0.5 265,041 - Dsui_0265 0.61 +0.1 265,079 + Dsui_0265 0.64 -0.1 265,087 - Dsui_0265 0.64 -1.1 265,104 + Dsui_0265 0.65 -0.4 265,121 + Dsui_0265 0.67 +1.9 265,205 + Dsui_0265 0.72 -0.8 265,264 - Dsui_0265 0.76 -0.3 265,413 + -0.0 265,464 + Dsui_0265 0.89 -1.1 265,656 + +0.7 265,713 + Dsui_0266 0.17 -1.1 265,713 - Dsui_0266 0.17 +0.4 265,756 - Dsui_0266 0.23 -0.2 265,882 + Dsui_0266 0.41 -1.0 265,896 - Dsui_0266 0.43 -0.3 265,933 - Dsui_0266 0.49 +1.1 265,942 + Dsui_0266 0.50 -2.3 265,986 - Dsui_0266 0.56 +0.1 266,015 + Dsui_0266 0.61 +0.5 266,015 - Dsui_0266 0.61 -0.4 266,023 - Dsui_0266 0.62 -0.3 266,048 + Dsui_0266 0.65 +0.1 266,081 - Dsui_0266 0.70 -0.1 266,132 - Dsui_0266 0.78 +0.1 266,135 + +0.7 266,138 - Dsui_0266 0.79 +0.4 266,224 - +0.6 266,287 + -0.4 266,297 - -0.1 266,328 + +0.9 266,328 + +2.3 266,336 - +0.8 266,361 - -0.7 266,362 + +0.6
Or see this region's nucleotide sequence