Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0131 and Dsui_0132 are separated by 101 nucleotides Dsui_0132 and Dsui_0133 are separated by 145 nucleotides
Dsui_0131: Dsui_0131 - phosphoenolpyruvate carboxykinase (GTP), at 131,185 to 133,044
_0131
Dsui_0132: Dsui_0132 - aspartate/tyrosine/aromatic aminotransferase, at 133,146 to 134,303
_0132
Dsui_0133: Dsui_0133 - hypothetical protein, at 134,449 to 135,519
_0133
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.247 kb on + strand, within Dsui_0131 at 132.247 kb on + strand, within Dsui_0131 at 132.255 kb on - strand, within Dsui_0131 at 132.275 kb on + strand, within Dsui_0131 at 132.278 kb on - strand, within Dsui_0131 at 132.283 kb on - strand, within Dsui_0131 at 132.335 kb on - strand, within Dsui_0131 at 132.353 kb on - strand, within Dsui_0131 at 132.485 kb on + strand, within Dsui_0131 at 132.526 kb on + strand, within Dsui_0131 at 132.532 kb on - strand, within Dsui_0131 at 132.539 kb on + strand, within Dsui_0131 at 132.839 kb on - strand, within Dsui_0131 at 133.024 kb on - strand at 133.026 kb on + strand at 133.026 kb on + strand at 133.034 kb on - strand at 133.107 kb on + strand at 133.114 kb on + strand at 133.122 kb on - strand at 133.122 kb on - strand at 133.200 kb on - strand at 133.257 kb on - strand at 133.339 kb on + strand, within Dsui_0132 at 133.339 kb on + strand, within Dsui_0132 at 133.344 kb on + strand, within Dsui_0132 at 133.352 kb on - strand, within Dsui_0132 at 133.353 kb on - strand, within Dsui_0132 at 133.467 kb on - strand, within Dsui_0132 at 133.472 kb on - strand, within Dsui_0132 at 133.554 kb on - strand at 133.622 kb on + strand, within Dsui_0132 at 133.622 kb on + strand, within Dsui_0132 at 133.649 kb on + strand, within Dsui_0132 at 133.650 kb on + strand, within Dsui_0132 at 133.684 kb on + strand, within Dsui_0132 at 133.685 kb on + strand, within Dsui_0132 at 133.822 kb on - strand, within Dsui_0132 at 133.835 kb on - strand, within Dsui_0132 at 133.840 kb on - strand, within Dsui_0132 at 133.885 kb on + strand at 133.895 kb on - strand, within Dsui_0132 at 133.895 kb on - strand, within Dsui_0132 at 133.961 kb on - strand, within Dsui_0132 at 133.998 kb on - strand, within Dsui_0132 at 134.049 kb on - strand at 134.095 kb on - strand, within Dsui_0132 at 134.106 kb on - strand, within Dsui_0132 at 134.140 kb on + strand, within Dsui_0132 at 134.243 kb on + strand at 134.264 kb on + strand at 134.305 kb on - strand at 134.319 kb on + strand at 134.352 kb on - strand at 134.412 kb on + strand at 134.412 kb on + strand at 134.414 kb on - strand at 134.514 kb on - strand at 134.587 kb on + strand, within Dsui_0133 at 134.590 kb on - strand, within Dsui_0133 at 134.626 kb on - strand, within Dsui_0133
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 132,247 + Dsui_0131 0.57 -0.0 132,247 + Dsui_0131 0.57 +0.1 132,255 - Dsui_0131 0.58 +0.2 132,275 + Dsui_0131 0.59 +0.4 132,278 - Dsui_0131 0.59 +0.9 132,283 - Dsui_0131 0.59 -0.3 132,335 - Dsui_0131 0.62 +0.6 132,353 - Dsui_0131 0.63 +0.0 132,485 + Dsui_0131 0.70 +0.6 132,526 + Dsui_0131 0.72 +0.5 132,532 - Dsui_0131 0.72 +1.7 132,539 + Dsui_0131 0.73 +0.0 132,839 - Dsui_0131 0.89 +1.4 133,024 - +0.7 133,026 + -0.5 133,026 + -0.0 133,034 - +1.1 133,107 + +1.0 133,114 + +0.2 133,122 - +0.5 133,122 - +0.1 133,200 - +1.6 133,257 - +0.2 133,339 + Dsui_0132 0.17 -1.0 133,339 + Dsui_0132 0.17 -0.9 133,344 + Dsui_0132 0.17 +0.6 133,352 - Dsui_0132 0.18 -0.1 133,353 - Dsui_0132 0.18 +0.0 133,467 - Dsui_0132 0.28 -0.3 133,472 - Dsui_0132 0.28 -0.4 133,554 - +1.4 133,622 + Dsui_0132 0.41 -1.8 133,622 + Dsui_0132 0.41 -1.3 133,649 + Dsui_0132 0.43 -0.8 133,650 + Dsui_0132 0.44 -0.9 133,684 + Dsui_0132 0.46 -0.4 133,685 + Dsui_0132 0.47 -1.0 133,822 - Dsui_0132 0.58 +0.4 133,835 - Dsui_0132 0.59 -0.7 133,840 - Dsui_0132 0.60 +0.0 133,885 + +1.8 133,895 - Dsui_0132 0.65 -0.1 133,895 - Dsui_0132 0.65 -0.2 133,961 - Dsui_0132 0.70 -0.9 133,998 - Dsui_0132 0.74 -0.0 134,049 - +0.6 134,095 - Dsui_0132 0.82 +0.5 134,106 - Dsui_0132 0.83 -0.5 134,140 + Dsui_0132 0.86 +0.3 134,243 + -1.2 134,264 + -0.4 134,305 - +0.4 134,319 + -1.4 134,352 - -0.2 134,412 + -0.3 134,412 + -0.5 134,414 - +0.2 134,514 - -2.8 134,587 + Dsui_0133 0.13 -1.1 134,590 - Dsui_0133 0.13 +1.1 134,626 - Dsui_0133 0.17 -0.1
Or see this region's nucleotide sequence