Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0129 and Dsui_0130 are separated by 177 nucleotides Dsui_0130 and Dsui_0131 are separated by 445 nucleotides
Dsui_0129: Dsui_0129 - putative esterase of the alpha-beta hydrolase superfamily, at 127,104 to 128,285
_0129
Dsui_0130: Dsui_0130 - malic enzyme, at 128,463 to 130,739
_0130
Dsui_0131: Dsui_0131 - phosphoenolpyruvate carboxykinase (GTP), at 131,185 to 133,044
_0131
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.474 kb on - strand, within Dsui_0129 at 127.502 kb on - strand, within Dsui_0129 at 127.570 kb on + strand at 127.578 kb on - strand, within Dsui_0129 at 127.659 kb on + strand, within Dsui_0129 at 127.659 kb on + strand at 127.667 kb on - strand, within Dsui_0129 at 127.689 kb on + strand, within Dsui_0129 at 127.689 kb on - strand, within Dsui_0129 at 127.760 kb on - strand at 127.804 kb on + strand, within Dsui_0129 at 127.828 kb on + strand, within Dsui_0129 at 127.887 kb on + strand, within Dsui_0129 at 127.899 kb on + strand, within Dsui_0129 at 128.024 kb on + strand at 128.079 kb on - strand, within Dsui_0129 at 128.118 kb on + strand at 128.247 kb on - strand at 128.560 kb on + strand at 128.615 kb on + strand at 128.620 kb on + strand at 128.665 kb on + strand at 128.671 kb on + strand at 128.706 kb on + strand, within Dsui_0130 at 128.788 kb on + strand, within Dsui_0130 at 128.798 kb on + strand at 128.863 kb on - strand, within Dsui_0130 at 128.987 kb on + strand, within Dsui_0130 at 128.987 kb on + strand, within Dsui_0130 at 129.064 kb on - strand, within Dsui_0130 at 129.065 kb on + strand, within Dsui_0130 at 129.099 kb on + strand at 129.102 kb on - strand, within Dsui_0130 at 129.128 kb on + strand, within Dsui_0130 at 129.128 kb on + strand, within Dsui_0130 at 129.136 kb on - strand, within Dsui_0130 at 129.185 kb on + strand, within Dsui_0130 at 129.234 kb on - strand, within Dsui_0130 at 129.263 kb on - strand, within Dsui_0130 at 129.278 kb on + strand at 129.287 kb on + strand at 129.421 kb on + strand, within Dsui_0130 at 129.421 kb on + strand, within Dsui_0130 at 129.429 kb on - strand, within Dsui_0130 at 129.429 kb on - strand, within Dsui_0130 at 129.429 kb on - strand, within Dsui_0130 at 129.475 kb on - strand, within Dsui_0130 at 129.541 kb on - strand, within Dsui_0130 at 129.592 kb on - strand, within Dsui_0130 at 129.629 kb on - strand, within Dsui_0130 at 129.665 kb on + strand, within Dsui_0130 at 129.665 kb on + strand, within Dsui_0130 at 129.678 kb on - strand, within Dsui_0130 at 129.799 kb on - strand, within Dsui_0130 at 129.803 kb on - strand, within Dsui_0130 at 129.841 kb on + strand, within Dsui_0130 at 129.874 kb on + strand, within Dsui_0130 at 129.874 kb on + strand, within Dsui_0130 at 129.874 kb on + strand, within Dsui_0130 at 129.886 kb on + strand, within Dsui_0130 at 129.922 kb on + strand, within Dsui_0130 at 130.069 kb on + strand, within Dsui_0130 at 130.084 kb on + strand, within Dsui_0130 at 130.100 kb on - strand, within Dsui_0130 at 130.308 kb on - strand, within Dsui_0130 at 130.311 kb on + strand, within Dsui_0130 at 130.318 kb on + strand, within Dsui_0130 at 130.326 kb on - strand, within Dsui_0130 at 130.326 kb on - strand, within Dsui_0130 at 130.342 kb on - strand, within Dsui_0130 at 130.363 kb on - strand, within Dsui_0130 at 130.380 kb on - strand, within Dsui_0130 at 130.438 kb on + strand at 130.460 kb on - strand, within Dsui_0130 at 130.461 kb on - strand, within Dsui_0130 at 130.631 kb on - strand at 130.660 kb on - strand at 130.660 kb on - strand at 130.677 kb on - strand at 130.699 kb on + strand at 130.714 kb on + strand at 130.722 kb on - strand at 130.732 kb on - strand at 130.741 kb on + strand at 130.781 kb on + strand at 130.791 kb on + strand at 130.799 kb on - strand at 130.799 kb on - strand at 130.815 kb on + strand at 130.823 kb on - strand at 130.823 kb on - strand at 130.823 kb on - strand at 130.823 kb on - strand at 130.829 kb on - strand at 130.834 kb on + strand at 130.842 kb on - strand at 130.878 kb on + strand at 130.879 kb on + strand at 130.886 kb on - strand at 130.887 kb on - strand at 130.955 kb on + strand at 131.012 kb on - strand at 131.037 kb on - strand at 131.054 kb on + strand at 131.057 kb on - strand at 131.062 kb on - strand at 131.089 kb on + strand at 131.093 kb on + strand at 131.099 kb on + strand at 131.099 kb on + strand at 131.122 kb on + strand at 131.172 kb on - strand at 131.175 kb on + strand at 131.175 kb on + strand at 131.175 kb on + strand at 131.175 kb on + strand at 131.183 kb on - strand at 131.183 kb on - strand at 131.183 kb on - strand at 131.199 kb on - strand at 131.201 kb on + strand at 131.201 kb on + strand at 131.211 kb on + strand at 131.211 kb on + strand at 131.229 kb on + strand at 131.236 kb on + strand at 131.247 kb on + strand at 131.273 kb on + strand at 131.277 kb on + strand at 131.277 kb on + strand at 131.277 kb on + strand at 131.277 kb on + strand at 131.277 kb on + strand at 131.277 kb on + strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.291 kb on + strand at 131.309 kb on + strand at 131.309 kb on + strand at 131.339 kb on - strand at 131.364 kb on + strand at 131.372 kb on - strand, within Dsui_0131 at 131.396 kb on - strand at 131.408 kb on + strand, within Dsui_0131 at 131.408 kb on + strand, within Dsui_0131 at 131.416 kb on - strand, within Dsui_0131 at 131.417 kb on + strand, within Dsui_0131 at 131.422 kb on + strand, within Dsui_0131 at 131.434 kb on + strand, within Dsui_0131 at 131.456 kb on + strand, within Dsui_0131 at 131.482 kb on - strand, within Dsui_0131 at 131.493 kb on - strand at 131.506 kb on + strand, within Dsui_0131 at 131.535 kb on + strand, within Dsui_0131 at 131.535 kb on + strand, within Dsui_0131 at 131.535 kb on + strand, within Dsui_0131 at 131.535 kb on + strand, within Dsui_0131 at 131.543 kb on - strand, within Dsui_0131 at 131.543 kb on - strand, within Dsui_0131 at 131.576 kb on - strand, within Dsui_0131 at 131.663 kb on + strand, within Dsui_0131 at 131.676 kb on + strand, within Dsui_0131 at 131.703 kb on - strand, within Dsui_0131 at 131.705 kb on + strand, within Dsui_0131 at 131.733 kb on + strand, within Dsui_0131
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 127,474 - Dsui_0129 0.31 -1.2 127,502 - Dsui_0129 0.34 +0.2 127,570 + +1.4 127,578 - Dsui_0129 0.40 -1.3 127,659 + Dsui_0129 0.47 -1.4 127,659 + +0.8 127,667 - Dsui_0129 0.48 -1.2 127,689 + Dsui_0129 0.49 -0.5 127,689 - Dsui_0129 0.49 +0.2 127,760 - +1.4 127,804 + Dsui_0129 0.59 +1.1 127,828 + Dsui_0129 0.61 +0.0 127,887 + Dsui_0129 0.66 +0.4 127,899 + Dsui_0129 0.67 +0.7 128,024 + +2.4 128,079 - Dsui_0129 0.82 -0.4 128,118 + +0.0 128,247 - -0.1 128,560 + +1.4 128,615 + +0.5 128,620 + -0.1 128,665 + -0.0 128,671 + -0.2 128,706 + Dsui_0130 0.11 +0.4 128,788 + Dsui_0130 0.14 +0.7 128,798 + +2.4 128,863 - Dsui_0130 0.18 +0.3 128,987 + Dsui_0130 0.23 -0.6 128,987 + Dsui_0130 0.23 +0.1 129,064 - Dsui_0130 0.26 +0.4 129,065 + Dsui_0130 0.26 +1.4 129,099 + +0.4 129,102 - Dsui_0130 0.28 +1.4 129,128 + Dsui_0130 0.29 -0.3 129,128 + Dsui_0130 0.29 -0.4 129,136 - Dsui_0130 0.30 +0.5 129,185 + Dsui_0130 0.32 -2.6 129,234 - Dsui_0130 0.34 -0.4 129,263 - Dsui_0130 0.35 -0.3 129,278 + -0.2 129,287 + +1.6 129,421 + Dsui_0130 0.42 +0.8 129,421 + Dsui_0130 0.42 -0.6 129,429 - Dsui_0130 0.42 +0.0 129,429 - Dsui_0130 0.42 +0.8 129,429 - Dsui_0130 0.42 -1.0 129,475 - Dsui_0130 0.44 -1.1 129,541 - Dsui_0130 0.47 -0.4 129,592 - Dsui_0130 0.50 +0.5 129,629 - Dsui_0130 0.51 -1.2 129,665 + Dsui_0130 0.53 +0.1 129,665 + Dsui_0130 0.53 +0.5 129,678 - Dsui_0130 0.53 +0.6 129,799 - Dsui_0130 0.59 +0.8 129,803 - Dsui_0130 0.59 +0.5 129,841 + Dsui_0130 0.61 -0.8 129,874 + Dsui_0130 0.62 +0.7 129,874 + Dsui_0130 0.62 -0.4 129,874 + Dsui_0130 0.62 +0.1 129,886 + Dsui_0130 0.62 +0.6 129,922 + Dsui_0130 0.64 -0.5 130,069 + Dsui_0130 0.71 +0.4 130,084 + Dsui_0130 0.71 +0.5 130,100 - Dsui_0130 0.72 +0.8 130,308 - Dsui_0130 0.81 -0.6 130,311 + Dsui_0130 0.81 -0.5 130,318 + Dsui_0130 0.81 -0.5 130,326 - Dsui_0130 0.82 -0.2 130,326 - Dsui_0130 0.82 -1.1 130,342 - Dsui_0130 0.83 -0.1 130,363 - Dsui_0130 0.83 +0.1 130,380 - Dsui_0130 0.84 -1.8 130,438 + +0.4 130,460 - Dsui_0130 0.88 -0.2 130,461 - Dsui_0130 0.88 +0.6 130,631 - +0.3 130,660 - +0.5 130,660 - +0.7 130,677 - +0.4 130,699 + -0.2 130,714 + +1.0 130,722 - +0.4 130,732 - +0.1 130,741 + +0.4 130,781 + -0.6 130,791 + +2.4 130,799 - +0.1 130,799 - -0.0 130,815 + +0.6 130,823 - -1.0 130,823 - -0.1 130,823 - +0.0 130,823 - +0.1 130,829 - -0.0 130,834 + +0.4 130,842 - +0.2 130,878 + +0.5 130,879 + +0.3 130,886 - +1.7 130,887 - +0.5 130,955 + +0.4 131,012 - +2.4 131,037 - -0.6 131,054 + +0.7 131,057 - +0.6 131,062 - +0.8 131,089 + +0.0 131,093 + -0.1 131,099 + -0.1 131,099 + +1.1 131,122 + -0.1 131,172 - +2.1 131,175 + +0.5 131,175 + +0.1 131,175 + -0.1 131,175 + +0.0 131,183 - -1.7 131,183 - +1.1 131,183 - -0.6 131,199 - +0.3 131,201 + +0.4 131,201 + +0.3 131,211 + +1.4 131,211 + +0.8 131,229 + +0.2 131,236 + +0.2 131,247 + +0.0 131,273 + +0.6 131,277 + +0.5 131,277 + +0.4 131,277 + -0.5 131,277 + +0.1 131,277 + +1.0 131,277 + +0.2 131,285 - +1.4 131,285 - +2.0 131,285 - -0.2 131,285 - +0.6 131,285 - +0.0 131,285 - +1.9 131,285 - +1.1 131,291 + +0.3 131,309 + +0.6 131,309 + -0.8 131,339 - +1.1 131,364 + +1.2 131,372 - Dsui_0131 0.10 -0.5 131,396 - +0.4 131,408 + Dsui_0131 0.12 +0.5 131,408 + Dsui_0131 0.12 -0.4 131,416 - Dsui_0131 0.12 +0.8 131,417 + Dsui_0131 0.12 +0.3 131,422 + Dsui_0131 0.13 +0.9 131,434 + Dsui_0131 0.13 +0.8 131,456 + Dsui_0131 0.15 +1.6 131,482 - Dsui_0131 0.16 +1.4 131,493 - +1.4 131,506 + Dsui_0131 0.17 +0.3 131,535 + Dsui_0131 0.19 -0.0 131,535 + Dsui_0131 0.19 +0.2 131,535 + Dsui_0131 0.19 +1.0 131,535 + Dsui_0131 0.19 +0.5 131,543 - Dsui_0131 0.19 +0.6 131,543 - Dsui_0131 0.19 +0.0 131,576 - Dsui_0131 0.21 +2.6 131,663 + Dsui_0131 0.26 +0.2 131,676 + Dsui_0131 0.26 -0.1 131,703 - Dsui_0131 0.28 +0.0 131,705 + Dsui_0131 0.28 +0.1 131,733 + Dsui_0131 0.29 +1.0
Or see this region's nucleotide sequence