Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0059 and Dsui_0060 are separated by 3 nucleotides Dsui_0060 and Dsui_0061 overlap by 4 nucleotides Dsui_0061 and Dsui_0062 are separated by 42 nucleotides Dsui_0062 and Dsui_0063 overlap by 8 nucleotides
Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104
_0059
Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082
_0060
Dsui_0061: Dsui_0061 - glycosyltransferase, at 58,079 to 59,182
_0061
Dsui_0062: Dsui_0062 - hypothetical protein, at 59,225 to 59,581
_0062
Dsui_0063: Dsui_0063 - hypothetical protein, at 59,574 to 60,317
_0063
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.106 kb on + strand at 57.119 kb on - strand at 57.132 kb on - strand at 57.137 kb on - strand at 57.139 kb on + strand at 57.147 kb on - strand at 57.147 kb on - strand at 57.183 kb on - strand at 57.275 kb on - strand, within Dsui_0060 at 57.283 kb on - strand, within Dsui_0060 at 57.297 kb on - strand, within Dsui_0060 at 57.331 kb on + strand, within Dsui_0060 at 57.420 kb on + strand, within Dsui_0060 at 57.486 kb on + strand, within Dsui_0060 at 57.539 kb on - strand, within Dsui_0060 at 57.584 kb on + strand, within Dsui_0060 at 57.590 kb on - strand, within Dsui_0060 at 57.592 kb on - strand, within Dsui_0060 at 57.681 kb on + strand, within Dsui_0060 at 57.762 kb on - strand, within Dsui_0060 at 57.764 kb on + strand, within Dsui_0060 at 57.764 kb on + strand, within Dsui_0060 at 57.772 kb on - strand, within Dsui_0060 at 57.816 kb on + strand, within Dsui_0060 at 57.829 kb on - strand, within Dsui_0060 at 57.831 kb on + strand, within Dsui_0060 at 57.831 kb on + strand, within Dsui_0060 at 57.838 kb on - strand, within Dsui_0060 at 57.863 kb on + strand, within Dsui_0060 at 57.863 kb on + strand, within Dsui_0060 at 57.882 kb on + strand, within Dsui_0060 at 57.888 kb on - strand, within Dsui_0060 at 57.903 kb on + strand, within Dsui_0060 at 57.994 kb on + strand at 57.994 kb on + strand at 58.003 kb on + strand at 58.023 kb on - strand at 58.046 kb on - strand at 58.087 kb on + strand at 58.128 kb on + strand at 58.138 kb on + strand at 58.148 kb on + strand at 58.148 kb on + strand at 58.215 kb on + strand, within Dsui_0061 at 58.276 kb on + strand, within Dsui_0061 at 58.320 kb on + strand, within Dsui_0061 at 58.333 kb on - strand, within Dsui_0061 at 58.352 kb on - strand, within Dsui_0061 at 58.359 kb on + strand, within Dsui_0061 at 58.421 kb on - strand, within Dsui_0061 at 58.421 kb on - strand, within Dsui_0061 at 58.515 kb on - strand, within Dsui_0061 at 58.585 kb on + strand, within Dsui_0061 at 58.632 kb on - strand, within Dsui_0061 at 58.662 kb on - strand, within Dsui_0061 at 58.672 kb on + strand, within Dsui_0061 at 58.674 kb on + strand, within Dsui_0061 at 58.680 kb on + strand, within Dsui_0061 at 58.687 kb on - strand, within Dsui_0061 at 58.688 kb on - strand, within Dsui_0061 at 58.693 kb on - strand, within Dsui_0061 at 58.706 kb on - strand, within Dsui_0061 at 58.709 kb on + strand, within Dsui_0061 at 58.709 kb on + strand, within Dsui_0061 at 58.773 kb on + strand, within Dsui_0061 at 58.773 kb on + strand, within Dsui_0061 at 58.818 kb on - strand, within Dsui_0061 at 58.823 kb on - strand, within Dsui_0061 at 58.843 kb on - strand, within Dsui_0061 at 58.889 kb on + strand, within Dsui_0061 at 58.908 kb on + strand, within Dsui_0061 at 58.914 kb on + strand, within Dsui_0061 at 58.914 kb on + strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.929 kb on + strand, within Dsui_0061 at 58.937 kb on - strand, within Dsui_0061 at 58.941 kb on + strand, within Dsui_0061 at 58.941 kb on + strand, within Dsui_0061 at 58.949 kb on - strand, within Dsui_0061 at 58.949 kb on - strand, within Dsui_0061 at 58.958 kb on + strand, within Dsui_0061 at 58.989 kb on + strand, within Dsui_0061 at 58.994 kb on + strand, within Dsui_0061 at 59.025 kb on - strand, within Dsui_0061 at 59.057 kb on - strand, within Dsui_0061 at 59.057 kb on - strand, within Dsui_0061 at 59.074 kb on - strand at 59.076 kb on - strand at 59.109 kb on + strand at 59.121 kb on - strand at 59.204 kb on + strand at 59.206 kb on + strand at 59.216 kb on + strand at 59.216 kb on + strand at 59.216 kb on + strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.225 kb on - strand at 59.237 kb on + strand at 59.244 kb on - strand at 59.248 kb on + strand at 59.256 kb on - strand at 59.256 kb on - strand at 59.258 kb on + strand at 59.258 kb on + strand at 59.258 kb on + strand at 59.258 kb on + strand at 59.266 kb on - strand, within Dsui_0062 at 59.266 kb on - strand, within Dsui_0062 at 59.281 kb on + strand, within Dsui_0062 at 59.295 kb on + strand, within Dsui_0062 at 59.298 kb on - strand, within Dsui_0062 at 59.306 kb on + strand, within Dsui_0062 at 59.314 kb on - strand, within Dsui_0062 at 59.377 kb on - strand, within Dsui_0062 at 59.379 kb on - strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.391 kb on - strand, within Dsui_0062 at 59.393 kb on + strand, within Dsui_0062 at 59.396 kb on - strand, within Dsui_0062 at 59.396 kb on - strand, within Dsui_0062 at 59.397 kb on - strand, within Dsui_0062 at 59.399 kb on + strand, within Dsui_0062 at 59.400 kb on - strand, within Dsui_0062 at 59.402 kb on + strand, within Dsui_0062 at 59.402 kb on + strand, within Dsui_0062 at 59.405 kb on - strand, within Dsui_0062 at 59.405 kb on - strand, within Dsui_0062 at 59.407 kb on - strand, within Dsui_0062 at 59.410 kb on - strand, within Dsui_0062 at 59.410 kb on - strand, within Dsui_0062 at 59.412 kb on - strand, within Dsui_0062 at 59.415 kb on - strand, within Dsui_0062 at 59.418 kb on + strand, within Dsui_0062 at 59.435 kb on + strand, within Dsui_0062 at 59.435 kb on + strand, within Dsui_0062 at 59.436 kb on - strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on - strand, within Dsui_0062 at 59.443 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.448 kb on + strand, within Dsui_0062 at 59.448 kb on - strand, within Dsui_0062 at 59.482 kb on - strand, within Dsui_0062 at 59.482 kb on - strand, within Dsui_0062 at 59.507 kb on - strand, within Dsui_0062 at 59.544 kb on - strand, within Dsui_0062 at 59.551 kb on - strand at 59.551 kb on - strand at 59.551 kb on - strand at 59.556 kb on - strand at 59.556 kb on - strand at 59.556 kb on - strand at 59.556 kb on - strand at 59.589 kb on - strand at 59.596 kb on + strand at 59.601 kb on + strand at 59.604 kb on - strand at 59.604 kb on - strand at 59.606 kb on + strand at 59.609 kb on - strand at 59.609 kb on - strand at 59.627 kb on - strand at 59.632 kb on - strand at 59.693 kb on + strand, within Dsui_0063 at 59.730 kb on + strand, within Dsui_0063 at 59.740 kb on + strand, within Dsui_0063 at 59.753 kb on - strand, within Dsui_0063 at 59.762 kb on - strand, within Dsui_0063 at 59.763 kb on + strand, within Dsui_0063 at 59.763 kb on + strand, within Dsui_0063 at 59.763 kb on + strand, within Dsui_0063 at 59.771 kb on + strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.776 kb on - strand, within Dsui_0063 at 59.776 kb on - strand, within Dsui_0063 at 59.778 kb on + strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.795 kb on + strand, within Dsui_0063 at 59.840 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.848 kb on - strand, within Dsui_0063 at 59.865 kb on - strand, within Dsui_0063 at 59.885 kb on - strand, within Dsui_0063 at 59.918 kb on + strand, within Dsui_0063 at 59.936 kb on - strand, within Dsui_0063 at 59.961 kb on - strand, within Dsui_0063 at 59.963 kb on - strand, within Dsui_0063 at 59.968 kb on - strand, within Dsui_0063 at 59.978 kb on - strand, within Dsui_0063 at 59.998 kb on - strand, within Dsui_0063 at 60.039 kb on + strand, within Dsui_0063 at 60.128 kb on + strand, within Dsui_0063 at 60.129 kb on - strand, within Dsui_0063 at 60.138 kb on + strand, within Dsui_0063 at 60.146 kb on - strand, within Dsui_0063
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 57,106 + -0.5 57,119 - -0.7 57,132 - +0.6 57,137 - -1.0 57,139 + -1.2 57,147 - -0.4 57,147 - -0.4 57,183 - -1.2 57,275 - Dsui_0060 0.17 -0.8 57,283 - Dsui_0060 0.18 -2.2 57,297 - Dsui_0060 0.19 -0.2 57,331 + Dsui_0060 0.23 -0.9 57,420 + Dsui_0060 0.32 -1.2 57,486 + Dsui_0060 0.39 -1.0 57,539 - Dsui_0060 0.44 -0.9 57,584 + Dsui_0060 0.49 -1.5 57,590 - Dsui_0060 0.49 -0.4 57,592 - Dsui_0060 0.50 -0.1 57,681 + Dsui_0060 0.59 -1.0 57,762 - Dsui_0060 0.67 +0.9 57,764 + Dsui_0060 0.67 -2.2 57,764 + Dsui_0060 0.67 -1.2 57,772 - Dsui_0060 0.68 -1.1 57,816 + Dsui_0060 0.73 -0.7 57,829 - Dsui_0060 0.74 -0.5 57,831 + Dsui_0060 0.74 -1.7 57,831 + Dsui_0060 0.74 -1.3 57,838 - Dsui_0060 0.75 -1.0 57,863 + Dsui_0060 0.77 -1.2 57,863 + Dsui_0060 0.77 -2.1 57,882 + Dsui_0060 0.79 -1.4 57,888 - Dsui_0060 0.80 -1.3 57,903 + Dsui_0060 0.82 +0.4 57,994 + +0.4 57,994 + -0.8 58,003 + -1.2 58,023 - -1.4 58,046 - -1.6 58,087 + -0.5 58,128 + -0.8 58,138 + -1.1 58,148 + -2.0 58,148 + -1.1 58,215 + Dsui_0061 0.12 -0.6 58,276 + Dsui_0061 0.18 -2.0 58,320 + Dsui_0061 0.22 -1.7 58,333 - Dsui_0061 0.23 -1.3 58,352 - Dsui_0061 0.25 -1.4 58,359 + Dsui_0061 0.25 -1.2 58,421 - Dsui_0061 0.31 -1.4 58,421 - Dsui_0061 0.31 -1.2 58,515 - Dsui_0061 0.39 -1.0 58,585 + Dsui_0061 0.46 -1.7 58,632 - Dsui_0061 0.50 -1.8 58,662 - Dsui_0061 0.53 -2.5 58,672 + Dsui_0061 0.54 -1.5 58,674 + Dsui_0061 0.54 -1.2 58,680 + Dsui_0061 0.54 -1.1 58,687 - Dsui_0061 0.55 -2.5 58,688 - Dsui_0061 0.55 -1.7 58,693 - Dsui_0061 0.56 -0.1 58,706 - Dsui_0061 0.57 -1.1 58,709 + Dsui_0061 0.57 -1.3 58,709 + Dsui_0061 0.57 -1.6 58,773 + Dsui_0061 0.63 -2.0 58,773 + Dsui_0061 0.63 -1.9 58,818 - Dsui_0061 0.67 -1.4 58,823 - Dsui_0061 0.67 -1.4 58,843 - Dsui_0061 0.69 -1.5 58,889 + Dsui_0061 0.73 -1.4 58,908 + Dsui_0061 0.75 -1.3 58,914 + Dsui_0061 0.76 -0.5 58,914 + Dsui_0061 0.76 -1.1 58,922 - Dsui_0061 0.76 -1.7 58,922 - Dsui_0061 0.76 -0.5 58,922 - Dsui_0061 0.76 -1.0 58,929 + Dsui_0061 0.77 -2.4 58,937 - Dsui_0061 0.78 -0.8 58,941 + Dsui_0061 0.78 -0.8 58,941 + Dsui_0061 0.78 -0.7 58,949 - Dsui_0061 0.79 -1.1 58,949 - Dsui_0061 0.79 -1.4 58,958 + Dsui_0061 0.80 -1.2 58,989 + Dsui_0061 0.82 -1.8 58,994 + Dsui_0061 0.83 -1.6 59,025 - Dsui_0061 0.86 -1.1 59,057 - Dsui_0061 0.89 -0.5 59,057 - Dsui_0061 0.89 -1.4 59,074 - -0.7 59,076 - -1.8 59,109 + -0.8 59,121 - -1.1 59,204 + +0.7 59,206 + -1.3 59,216 + -0.1 59,216 + -0.1 59,216 + -0.8 59,224 - +0.8 59,224 - +0.2 59,224 - +0.0 59,224 - +0.3 59,224 - +0.4 59,224 - -0.4 59,224 - +0.8 59,224 - +0.1 59,224 - -0.1 59,224 - +0.1 59,224 - +1.1 59,224 - +0.0 59,225 - +0.0 59,237 + -0.1 59,244 - -0.0 59,248 + -0.5 59,256 - +0.3 59,256 - +0.4 59,258 + +0.6 59,258 + +0.2 59,258 + +1.4 59,258 + -0.3 59,266 - Dsui_0062 0.11 +0.1 59,266 - Dsui_0062 0.11 +0.1 59,281 + Dsui_0062 0.16 +0.1 59,295 + Dsui_0062 0.20 -0.6 59,298 - Dsui_0062 0.20 -1.1 59,306 + Dsui_0062 0.23 +0.1 59,314 - Dsui_0062 0.25 +0.1 59,377 - Dsui_0062 0.43 -0.2 59,379 - Dsui_0062 0.43 +0.1 59,389 + Dsui_0062 0.46 +1.8 59,389 + Dsui_0062 0.46 -0.6 59,389 + Dsui_0062 0.46 -0.0 59,389 + Dsui_0062 0.46 -0.6 59,389 + Dsui_0062 0.46 +0.6 59,391 - Dsui_0062 0.46 -0.7 59,393 + Dsui_0062 0.47 -1.1 59,396 - Dsui_0062 0.48 +0.0 59,396 - Dsui_0062 0.48 +0.4 59,397 - Dsui_0062 0.48 -0.2 59,399 + Dsui_0062 0.49 +0.2 59,400 - Dsui_0062 0.49 +0.0 59,402 + Dsui_0062 0.50 -1.0 59,402 + Dsui_0062 0.50 -0.6 59,405 - Dsui_0062 0.50 +0.7 59,405 - Dsui_0062 0.50 -0.1 59,407 - Dsui_0062 0.51 -1.1 59,410 - Dsui_0062 0.52 +0.8 59,410 - Dsui_0062 0.52 -0.4 59,412 - Dsui_0062 0.52 -0.1 59,415 - Dsui_0062 0.53 -0.3 59,418 + Dsui_0062 0.54 -2.4 59,435 + Dsui_0062 0.59 +0.3 59,435 + Dsui_0062 0.59 +0.5 59,436 - Dsui_0062 0.59 -0.2 59,438 + Dsui_0062 0.60 +0.4 59,438 + Dsui_0062 0.60 +0.1 59,438 + Dsui_0062 0.60 -0.6 59,438 + Dsui_0062 0.60 -0.4 59,438 - Dsui_0062 0.60 -1.0 59,443 - Dsui_0062 0.61 +0.7 59,446 - Dsui_0062 0.62 +0.2 59,446 - Dsui_0062 0.62 +0.3 59,446 - Dsui_0062 0.62 +1.1 59,446 - Dsui_0062 0.62 -0.1 59,446 - Dsui_0062 0.62 +0.1 59,446 - Dsui_0062 0.62 -1.3 59,446 - Dsui_0062 0.62 -0.0 59,446 - Dsui_0062 0.62 -0.3 59,448 + Dsui_0062 0.62 -0.5 59,448 - Dsui_0062 0.62 -0.4 59,482 - Dsui_0062 0.72 -0.8 59,482 - Dsui_0062 0.72 -0.6 59,507 - Dsui_0062 0.79 -0.5 59,544 - Dsui_0062 0.89 +0.2 59,551 - -0.6 59,551 - +0.1 59,551 - +1.1 59,556 - +0.6 59,556 - -0.3 59,556 - -0.3 59,556 - +0.9 59,589 - -0.9 59,596 + +1.1 59,601 + +0.1 59,604 - -0.0 59,604 - -0.1 59,606 + -0.3 59,609 - +1.1 59,609 - -0.1 59,627 - -0.2 59,632 - +0.7 59,693 + Dsui_0063 0.16 +0.5 59,730 + Dsui_0063 0.21 -0.7 59,740 + Dsui_0063 0.22 +0.1 59,753 - Dsui_0063 0.24 -0.6 59,762 - Dsui_0063 0.25 +0.3 59,763 + Dsui_0063 0.25 +0.3 59,763 + Dsui_0063 0.25 -2.0 59,763 + Dsui_0063 0.25 +0.7 59,771 + Dsui_0063 0.26 -0.2 59,771 - Dsui_0063 0.26 -0.3 59,771 - Dsui_0063 0.26 -0.1 59,771 - Dsui_0063 0.26 -0.2 59,771 - Dsui_0063 0.26 -0.5 59,773 + Dsui_0063 0.27 -0.0 59,773 + Dsui_0063 0.27 +1.2 59,773 + Dsui_0063 0.27 -1.2 59,773 + Dsui_0063 0.27 +1.4 59,773 + Dsui_0063 0.27 +0.4 59,773 + Dsui_0063 0.27 -0.1 59,773 + Dsui_0063 0.27 -0.2 59,773 + Dsui_0063 0.27 +0.2 59,773 + Dsui_0063 0.27 -0.1 59,773 + Dsui_0063 0.27 -0.4 59,773 + Dsui_0063 0.27 -1.1 59,773 + Dsui_0063 0.27 -0.2 59,776 - Dsui_0063 0.27 +0.4 59,776 - Dsui_0063 0.27 +0.2 59,778 + Dsui_0063 0.27 +0.1 59,781 - Dsui_0063 0.28 -1.9 59,781 - Dsui_0063 0.28 -0.1 59,781 - Dsui_0063 0.28 -0.5 59,781 - Dsui_0063 0.28 +0.5 59,781 - Dsui_0063 0.28 -0.1 59,781 - Dsui_0063 0.28 +1.4 59,781 - Dsui_0063 0.28 +0.1 59,781 - Dsui_0063 0.28 +0.6 59,781 - Dsui_0063 0.28 +0.3 59,781 - Dsui_0063 0.28 -0.2 59,795 + Dsui_0063 0.30 -0.0 59,840 - Dsui_0063 0.36 +0.3 59,841 - Dsui_0063 0.36 -0.5 59,841 - Dsui_0063 0.36 -0.2 59,841 - Dsui_0063 0.36 +0.1 59,841 - Dsui_0063 0.36 +0.4 59,848 - Dsui_0063 0.37 +0.4 59,865 - Dsui_0063 0.39 +0.1 59,885 - Dsui_0063 0.42 +0.5 59,918 + Dsui_0063 0.46 -0.5 59,936 - Dsui_0063 0.49 +0.6 59,961 - Dsui_0063 0.52 +0.0 59,963 - Dsui_0063 0.52 -0.2 59,968 - Dsui_0063 0.53 -0.5 59,978 - Dsui_0063 0.54 +1.4 59,998 - Dsui_0063 0.57 +0.3 60,039 + Dsui_0063 0.62 +0.2 60,128 + Dsui_0063 0.74 -0.7 60,129 - Dsui_0063 0.75 +0.9 60,138 + Dsui_0063 0.76 +0.0 60,146 - Dsui_0063 0.77 -0.2
Or see this region's nucleotide sequence