Strain Fitness in Shewanella amazonensis SB2B around Sama_2007

Experiment: D,L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate
2,437,682	+		Sama_2006	0.61	-0.7
2,437,683	-		Sama_2006	0.61	+1.3
2,437,683	-		Sama_2006	0.61	-1.5
2,437,700	+		Sama_2006	0.62	+0.4
2,437,836	+		Sama_2006	0.68	+0.4
2,437,836	+		Sama_2006	0.68	-0.4
2,437,837	-		Sama_2006	0.68	+0.4
2,437,845	+		Sama_2006	0.69	+1.0
2,437,856	+		Sama_2006	0.69	+0.9
2,437,857	-		Sama_2006	0.69	-0.6
2,437,857	-		Sama_2006	0.69	+0.4
2,437,959	+		Sama_2006	0.74	-2.1
2,437,960	-		Sama_2006	0.74	+1.3
2,438,062	+		Sama_2006	0.79	-0.1
2,438,062	+		Sama_2006	0.79	+0.6
2,438,063	-		Sama_2006	0.79	+0.2
2,438,086	+		Sama_2006	0.80	+1.3
2,438,087	-		Sama_2006	0.80	-0.0
2,438,118	+		Sama_2006	0.81	-0.7
2,438,119	-		Sama_2006	0.81	-0.2
2,438,161	-		Sama_2006	0.83	-1.0
2,438,185	-		Sama_2006	0.84	+0.9
2,438,198	+		Sama_2006	0.85	-1.1
2,438,198	+		Sama_2006	0.85	+0.9
2,438,198	+		Sama_2006	0.85	+1.3
2,438,212	+		Sama_2006	0.86	+0.8
2,438,213	-		Sama_2006	0.86	+0.6
2,438,213	-		Sama_2006	0.86	-1.1
2,438,231	+		Sama_2006	0.86	-0.0
2,438,256	-		Sama_2006	0.88	+0.3
2,438,300	+		Sama_2006	0.90	-0.6
2,438,300	+		Sama_2006	0.90	-0.9
2,438,382	-				-1.3
2,438,385	-				-1.5
2,438,409	+				+0.1
2,438,409	+				-0.7
2,438,409	+				-0.6
2,438,410	-				+1.1
2,438,410	-				+0.5
2,438,411	+				+1.2
2,438,411	+				-0.0
2,438,486	+				+1.1
2,438,486	+				-1.1
2,438,486	+				-1.1
2,438,553	-				+0.6
2,438,658	-				+0.9
2,438,658	-				+0.5
2,438,665	+				-0.4
2,438,678	+				-0.9
2,438,678	+				-0.5
2,438,688	+				+0.1
2,438,688	+				+1.9
2,438,760	+				+0.1
2,438,760	+				-0.9
2,438,760	+				-2.1
2,438,760	+				+0.6
2,438,761	-				+0.4
2,438,761	-				-0.1
2,438,765	+				+0.4
2,438,766	-				-0.7
2,438,799	+		Sama_2007	0.12	-1.1
2,438,800	-		Sama_2007	0.12	-1.8
2,438,832	-		Sama_2007	0.15	-2.1
2,438,886	-		Sama_2007	0.21	+0.2
2,438,948	+		Sama_2007	0.27	-0.6
2,438,948	+		Sama_2007	0.27	-0.4
2,438,948	+		Sama_2007	0.27	+0.2
2,438,951	+		Sama_2007	0.27	-0.7
2,438,951	+		Sama_2007	0.27	-1.5
2,438,951	+		Sama_2007	0.27	+1.1
2,438,952	-		Sama_2007	0.27	-0.1
2,438,952	-		Sama_2007	0.27	-0.9
2,439,008	+		Sama_2007	0.33	-0.9
2,439,036	+		Sama_2007	0.36	+0.1
2,439,063	+		Sama_2007	0.38	-0.4
2,439,063	+		Sama_2007	0.38	-2.4
2,439,063	+		Sama_2007	0.38	+0.4
2,439,063	+		Sama_2007	0.38	+0.9
2,439,064	-		Sama_2007	0.38	+1.3
2,439,064	-		Sama_2007	0.38	-1.6
2,439,064	-		Sama_2007	0.38	-0.1
2,439,115	+		Sama_2007	0.43	-0.7
2,439,212	+		Sama_2007	0.53	-3.4
2,439,212	+		Sama_2007	0.53	-1.8
2,439,212	+		Sama_2007	0.53	-0.0
2,439,212	+		Sama_2007	0.53	+1.2
2,439,212	+		Sama_2007	0.53	-0.9
2,439,212	+		Sama_2007	0.53	+0.9
2,439,213	-		Sama_2007	0.53	-0.7
2,439,302	+		Sama_2007	0.62	-0.1
2,439,302	+		Sama_2007	0.62	+0.1
2,439,347	+		Sama_2007	0.67	-1.7
2,439,347	+		Sama_2007	0.67	-0.8
2,439,347	+		Sama_2007	0.67	-1.7
2,439,347	+		Sama_2007	0.67	-0.0
2,439,348	-		Sama_2007	0.67	-0.0
2,439,348	-		Sama_2007	0.67	-0.7
2,439,361	-		Sama_2007	0.68	+0.9
2,439,368	+		Sama_2007	0.69	+0.9
2,439,369	-		Sama_2007	0.69	-0.3
2,439,400	+		Sama_2007	0.72	+0.1
2,439,400	+		Sama_2007	0.72	-1.5
2,439,401	-		Sama_2007	0.72	-0.1
2,439,401	-		Sama_2007	0.72	-0.3
2,439,404	+		Sama_2007	0.72	-0.9
2,439,404	+		Sama_2007	0.72	-0.4
2,439,404	+		Sama_2007	0.72	+1.7
2,439,404	+		Sama_2007	0.72	-0.1
2,439,404	+		Sama_2007	0.72	-1.1
2,439,404	+		Sama_2007	0.72	+0.4
2,439,404	+		Sama_2007	0.72	-0.9
2,439,405	-		Sama_2007	0.72	+0.2
2,439,405	-		Sama_2007	0.72	-0.5
2,439,406	+		Sama_2007	0.72	-1.2
2,439,406	+		Sama_2007	0.72	+0.6
2,439,406	+		Sama_2007	0.72	-1.0
2,439,406	+		Sama_2007	0.72	+0.6
2,439,406	+		Sama_2007	0.72	-1.8
2,439,406	+		Sama_2007	0.72	-1.5
2,439,407	-		Sama_2007	0.73	+4.2
2,439,407	-		Sama_2007	0.73	-0.4
2,439,442	+		Sama_2007	0.76	-0.4
2,439,443	-		Sama_2007	0.76	+0.1
2,439,452	+		Sama_2007	0.77	+1.4
2,439,452	+		Sama_2007	0.77	-0.4
2,439,452	+		Sama_2007	0.77	-0.1
2,439,453	-		Sama_2007	0.77	+1.4
2,439,540	+		Sama_2007	0.86	+0.2
2,439,540	+		Sama_2007	0.86	-0.3
2,439,541	-		Sama_2007	0.86	-0.1
2,439,606	+				+0.9
2,439,606	+				-1.3
2,439,606	+				-1.3
2,439,606	+				+0.4
2,439,607	-				+0.9
2,439,607	-				+0.5
2,439,700	+				-2.1
2,439,730	+				+1.9
2,439,747	+				-1.1
2,439,830	-				+0.9
2,439,834	+				-1.1
2,439,834	+				-1.7
2,439,845	+				-2.5
2,439,875	+				-1.5
2,439,876	-				-1.5
2,439,876	-				-1.1
2,439,876	-				-1.5
2,439,876	-				-2.8
2,439,940	+		Sama_2008	0.14	-3.5
2,439,941	-		Sama_2008	0.14	-0.9
2,439,941	-		Sama_2008	0.14	-2.1
2,439,941	-		Sama_2008	0.14	-1.7
2,440,056	-		Sama_2008	0.24	-0.5
2,440,056	-		Sama_2008	0.24	-3.5
2,440,056	-		Sama_2008	0.24	-3.0
2,440,105	+		Sama_2008	0.28	+0.4
2,440,106	-		Sama_2008	0.28	-2.6
2,440,106	-		Sama_2008	0.28	-0.7
2,440,106	-		Sama_2008	0.28	-1.7
2,440,106	-		Sama_2008	0.28	-0.1
2,440,136	+		Sama_2008	0.30	-1.3
2,440,136	+		Sama_2008	0.30	-2.9
2,440,136	+		Sama_2008	0.30	-2.9
2,440,137	-		Sama_2008	0.31	-2.9
2,440,137	-		Sama_2008	0.31	-0.1
2,440,137	-		Sama_2008	0.31	-3.3
2,440,137	-		Sama_2008	0.31	-0.9
2,440,137	-		Sama_2008	0.31	-2.6
2,440,165	+		Sama_2008	0.33	+0.9
2,440,166	-		Sama_2008	0.33	-2.5
2,440,168	+		Sama_2008	0.33	-1.1
2,440,169	-		Sama_2008	0.33	-3.2
2,440,169	-		Sama_2008	0.33	-2.5
2,440,169	-		Sama_2008	0.33	-1.1
2,440,202	+		Sama_2008	0.36	-1.5
2,440,248	+		Sama_2008	0.40	-1.9
2,440,248	+		Sama_2008	0.40	-2.9
2,440,249	-		Sama_2008	0.40	-1.9
2,440,316	+		Sama_2008	0.45	-2.3
2,440,399	+		Sama_2008	0.52	-3.8
2,440,399	+		Sama_2008	0.52	-3.1
2,440,399	+		Sama_2008	0.52	-3.1
2,440,400	-		Sama_2008	0.52	-3.2
2,440,454	-		Sama_2008	0.57	-1.7
2,440,480	+		Sama_2008	0.59	-1.3
2,440,480	+		Sama_2008	0.59	-1.3
2,440,516	+		Sama_2008	0.62	-2.6
2,440,516	+		Sama_2008	0.62	-2.8
2,440,516	+		Sama_2008	0.62	-1.9
2,440,517	-		Sama_2008	0.62	-2.5