Strain Fitness in Shewanella amazonensis SB2B around Sama_1439

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1438 and Sama_1439 are separated by 16 nucleotidesSama_1439 and Sama_1440 overlap by 4 nucleotidesSama_1440 and bioD overlap by 4 nucleotides Sama_1438: Sama_1438 - biotin synthase (RefSeq), at 1,748,465 to 1,749,529 _1438 Sama_1439: Sama_1439 - 8-amino-7-oxononanoate synthase (RefSeq), at 1,749,546 to 1,750,703 _1439 Sama_1440: Sama_1440 - biotin synthesis protein BioC (RefSeq), at 1,750,700 to 1,751,446 _1440 Sama_1441: bioD - dithiobiotin synthetase (RefSeq), at 1,751,443 to 1,752,135 bioD Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -1 0 1at 1751.442 kb on + strandat 1751.449 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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1,751,442 + +0.8
1,751,449 + -1.2

Or see this region's nucleotide sequence