Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0702 and Sama_0703 are separated by 9 nucleotides Sama_0703 and Sama_0704 overlap by 4 nucleotides Sama_0704 and Sama_0705 overlap by 4 nucleotides Sama_0705 and Sama_0706 are separated by 22 nucleotides
Sama_0702: Sama_0702 - hypothetical protein (RefSeq), at 864,848 to 866,221
_0702
Sama_0703: Sama_0703 - hypothetical protein (RefSeq), at 866,231 to 867,118
_0703
Sama_0704: Sama_0704 - hypothetical protein (RefSeq), at 867,115 to 867,789
_0704
Sama_0705: Sama_0705 - hypothetical protein (RefSeq), at 867,786 to 867,980
_0705
Sama_0706: Sama_0706 - Flp pilus assembly protein CpaB-like protein (RefSeq), at 868,003 to 868,899
_0706
Position (kb) 867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 866.138 kb on + strand at 866.138 kb on + strand at 866.139 kb on - strand at 866.139 kb on - strand at 866.171 kb on - strand at 866.198 kb on + strand at 866.198 kb on + strand at 866.199 kb on - strand at 866.199 kb on - strand at 866.202 kb on + strand at 866.203 kb on - strand at 866.203 kb on - strand at 866.219 kb on + strand at 866.219 kb on + strand at 866.219 kb on + strand at 866.219 kb on + strand at 866.219 kb on + strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.284 kb on + strand at 866.285 kb on - strand at 866.285 kb on - strand at 866.285 kb on - strand at 866.287 kb on + strand at 866.287 kb on + strand at 866.350 kb on + strand, within Sama_0703 at 866.351 kb on - strand, within Sama_0703 at 866.367 kb on - strand, within Sama_0703 at 866.367 kb on - strand, within Sama_0703 at 866.435 kb on + strand, within Sama_0703 at 866.435 kb on + strand, within Sama_0703 at 866.435 kb on + strand, within Sama_0703 at 866.435 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.519 kb on + strand, within Sama_0703 at 866.520 kb on - strand, within Sama_0703 at 866.520 kb on - strand, within Sama_0703 at 866.520 kb on - strand, within Sama_0703 at 866.520 kb on - strand, within Sama_0703 at 866.520 kb on - strand, within Sama_0703 at 866.521 kb on + strand, within Sama_0703 at 866.534 kb on - strand, within Sama_0703 at 866.674 kb on + strand, within Sama_0703 at 866.729 kb on + strand, within Sama_0703 at 866.729 kb on + strand, within Sama_0703 at 866.730 kb on - strand, within Sama_0703 at 866.730 kb on - strand, within Sama_0703 at 866.762 kb on + strand, within Sama_0703 at 866.762 kb on + strand, within Sama_0703 at 866.762 kb on + strand, within Sama_0703 at 866.762 kb on + strand, within Sama_0703 at 866.762 kb on + strand, within Sama_0703 at 866.762 kb on + strand, within Sama_0703 at 866.763 kb on - strand, within Sama_0703 at 866.763 kb on - strand, within Sama_0703 at 866.763 kb on - strand, within Sama_0703 at 866.763 kb on - strand, within Sama_0703 at 866.775 kb on + strand, within Sama_0703 at 866.775 kb on + strand, within Sama_0703 at 866.775 kb on + strand, within Sama_0703 at 866.776 kb on - strand, within Sama_0703 at 866.995 kb on + strand, within Sama_0703 at 867.071 kb on - strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.079 kb on + strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.080 kb on - strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.083 kb on + strand at 867.131 kb on + strand at 867.137 kb on + strand at 867.137 kb on + strand at 867.138 kb on - strand at 867.215 kb on + strand, within Sama_0704 at 867.225 kb on + strand, within Sama_0704 at 867.226 kb on - strand, within Sama_0704 at 867.399 kb on + strand, within Sama_0704 at 867.422 kb on - strand, within Sama_0704 at 867.422 kb on - strand, within Sama_0704 at 867.439 kb on + strand, within Sama_0704 at 867.439 kb on + strand, within Sama_0704 at 867.439 kb on + strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.440 kb on - strand, within Sama_0704 at 867.447 kb on + strand, within Sama_0704 at 867.447 kb on + strand, within Sama_0704 at 867.534 kb on + strand, within Sama_0704 at 867.556 kb on - strand, within Sama_0704 at 867.556 kb on - strand, within Sama_0704 at 867.597 kb on - strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.607 kb on + strand, within Sama_0704 at 867.608 kb on - strand, within Sama_0704 at 867.608 kb on - strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.613 kb on + strand, within Sama_0704 at 867.614 kb on - strand, within Sama_0704 at 867.614 kb on - strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.616 kb on + strand, within Sama_0704 at 867.625 kb on + strand, within Sama_0704 at 867.625 kb on + strand, within Sama_0704 at 867.628 kb on + strand, within Sama_0704 at 867.628 kb on + strand, within Sama_0704 at 867.628 kb on + strand, within Sama_0704 at 867.629 kb on - strand, within Sama_0704 at 867.629 kb on - strand, within Sama_0704 at 867.662 kb on + strand, within Sama_0704 at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.725 kb on + strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.726 kb on - strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.729 kb on + strand at 867.730 kb on - strand at 867.730 kb on - strand at 867.758 kb on + strand at 867.758 kb on + strand at 867.758 kb on + strand at 867.759 kb on - strand at 867.825 kb on + strand, within Sama_0705 at 867.882 kb on - strand, within Sama_0705 at 867.899 kb on - strand, within Sama_0705 at 867.933 kb on + strand, within Sama_0705 at 867.978 kb on + strand at 867.987 kb on + strand at 867.987 kb on + strand at 867.988 kb on - strand at 867.988 kb on - strand at 868.019 kb on + strand at 868.020 kb on - strand at 868.026 kb on + strand at 868.027 kb on - strand at 868.090 kb on + strand at 868.091 kb on - strand at 868.143 kb on - strand, within Sama_0706 at 868.182 kb on + strand, within Sama_0706 at 868.209 kb on + strand, within Sama_0706 at 868.209 kb on + strand, within Sama_0706 at 868.209 kb on + strand, within Sama_0706 at 868.210 kb on - strand, within Sama_0706 at 868.210 kb on - strand, within Sama_0706 at 868.224 kb on + strand, within Sama_0706 at 868.326 kb on + strand, within Sama_0706 at 868.326 kb on + strand, within Sama_0706 at 868.326 kb on + strand, within Sama_0706 at 868.327 kb on - strand, within Sama_0706 at 868.336 kb on + strand, within Sama_0706 at 868.336 kb on + strand, within Sama_0706 at 868.336 kb on + strand, within Sama_0706 at 868.337 kb on - strand, within Sama_0706 at 868.340 kb on + strand, within Sama_0706 at 868.475 kb on - strand, within Sama_0706 at 868.475 kb on - strand, within Sama_0706 at 868.475 kb on - strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.562 kb on + strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.563 kb on - strand, within Sama_0706 at 868.568 kb on + strand, within Sama_0706 at 868.568 kb on + strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.569 kb on - strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.594 kb on + strand, within Sama_0706 at 868.595 kb on - strand, within Sama_0706 at 868.612 kb on + strand, within Sama_0706 at 868.612 kb on + strand, within Sama_0706 at 868.623 kb on + strand, within Sama_0706 at 868.737 kb on + strand, within Sama_0706 at 868.738 kb on - strand, within Sama_0706 at 868.761 kb on + strand, within Sama_0706
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 866,138 + +0.4 866,138 + -0.6 866,139 - -1.8 866,139 - +0.0 866,171 - +0.3 866,198 + -1.3 866,198 + +0.0 866,199 - -0.8 866,199 - +0.3 866,202 + +0.0 866,203 - -0.2 866,203 - +0.2 866,219 + -1.9 866,219 + +0.8 866,219 + -0.4 866,219 + -0.9 866,219 + -2.4 866,220 - -0.8 866,220 - -0.5 866,220 - +0.5 866,220 - -0.7 866,284 + -0.4 866,285 - +0.2 866,285 - +0.3 866,285 - -0.2 866,287 + +0.3 866,287 + -0.1 866,350 + Sama_0703 0.13 -0.2 866,351 - Sama_0703 0.14 -0.6 866,367 - Sama_0703 0.15 -0.3 866,367 - Sama_0703 0.15 -0.7 866,435 + Sama_0703 0.23 -1.0 866,435 + Sama_0703 0.23 -0.4 866,435 + Sama_0703 0.23 -1.2 866,435 + Sama_0703 0.23 -0.5 866,519 + Sama_0703 0.32 -0.6 866,519 + Sama_0703 0.32 +0.6 866,519 + Sama_0703 0.32 -1.8 866,519 + Sama_0703 0.32 +1.0 866,519 + Sama_0703 0.32 -0.1 866,519 + Sama_0703 0.32 -1.0 866,519 + Sama_0703 0.32 +1.6 866,519 + Sama_0703 0.32 +0.6 866,519 + Sama_0703 0.32 -0.8 866,520 - Sama_0703 0.33 -0.4 866,520 - Sama_0703 0.33 +0.6 866,520 - Sama_0703 0.33 +0.2 866,520 - Sama_0703 0.33 -0.6 866,520 - Sama_0703 0.33 -0.4 866,521 + Sama_0703 0.33 +1.1 866,534 - Sama_0703 0.34 -0.2 866,674 + Sama_0703 0.50 -1.1 866,729 + Sama_0703 0.56 +0.2 866,729 + Sama_0703 0.56 -0.4 866,730 - Sama_0703 0.56 +0.2 866,730 - Sama_0703 0.56 +0.5 866,762 + Sama_0703 0.60 -1.8 866,762 + Sama_0703 0.60 -1.1 866,762 + Sama_0703 0.60 -0.4 866,762 + Sama_0703 0.60 -1.0 866,762 + Sama_0703 0.60 -0.4 866,762 + Sama_0703 0.60 -0.1 866,763 - Sama_0703 0.60 -1.9 866,763 - Sama_0703 0.60 +1.1 866,763 - Sama_0703 0.60 +0.2 866,763 - Sama_0703 0.60 -0.4 866,775 + Sama_0703 0.61 -0.9 866,775 + Sama_0703 0.61 -0.5 866,775 + Sama_0703 0.61 -0.2 866,776 - Sama_0703 0.61 -2.1 866,995 + Sama_0703 0.86 -2.5 867,071 - -0.0 867,079 + +0.1 867,079 + +0.2 867,079 + -0.4 867,079 + +0.6 867,079 + +0.4 867,079 + -0.6 867,079 + +0.2 867,079 + -0.5 867,080 - -1.1 867,080 - -1.1 867,080 - +1.0 867,080 - +1.5 867,080 - +0.2 867,080 - -3.0 867,083 + -0.9 867,083 + -1.4 867,083 + +0.0 867,083 + -0.2 867,083 + +2.0 867,083 + -0.4 867,083 + -0.5 867,131 + -0.1 867,137 + +0.7 867,137 + +0.6 867,138 - +0.2 867,215 + Sama_0704 0.15 -0.0 867,225 + Sama_0704 0.16 +0.6 867,226 - Sama_0704 0.16 -0.5 867,399 + Sama_0704 0.42 -0.3 867,422 - Sama_0704 0.45 -0.2 867,422 - Sama_0704 0.45 -0.0 867,439 + Sama_0704 0.48 +0.9 867,439 + Sama_0704 0.48 +0.8 867,439 + Sama_0704 0.48 +2.8 867,440 - Sama_0704 0.48 -1.3 867,440 - Sama_0704 0.48 +0.7 867,440 - Sama_0704 0.48 -0.9 867,440 - Sama_0704 0.48 +0.5 867,440 - Sama_0704 0.48 -0.6 867,447 + Sama_0704 0.49 -1.4 867,447 + Sama_0704 0.49 +1.6 867,534 + Sama_0704 0.62 -0.0 867,556 - Sama_0704 0.65 -1.9 867,556 - Sama_0704 0.65 +1.2 867,597 - Sama_0704 0.71 -1.2 867,607 + Sama_0704 0.73 +0.0 867,607 + Sama_0704 0.73 +0.3 867,607 + Sama_0704 0.73 -0.9 867,607 + Sama_0704 0.73 -0.4 867,608 - Sama_0704 0.73 +0.0 867,608 - Sama_0704 0.73 +1.2 867,613 + Sama_0704 0.74 -0.5 867,613 + Sama_0704 0.74 -0.5 867,613 + Sama_0704 0.74 +1.4 867,613 + Sama_0704 0.74 -1.3 867,614 - Sama_0704 0.74 -0.3 867,614 - Sama_0704 0.74 -0.6 867,616 + Sama_0704 0.74 -0.6 867,616 + Sama_0704 0.74 +2.6 867,616 + Sama_0704 0.74 +0.4 867,616 + Sama_0704 0.74 +0.1 867,616 + Sama_0704 0.74 -0.1 867,616 + Sama_0704 0.74 -0.1 867,625 + Sama_0704 0.76 +0.8 867,625 + Sama_0704 0.76 +1.8 867,628 + Sama_0704 0.76 +0.4 867,628 + Sama_0704 0.76 +1.5 867,628 + Sama_0704 0.76 +0.0 867,629 - Sama_0704 0.76 -0.8 867,629 - Sama_0704 0.76 -0.1 867,662 + Sama_0704 0.81 -0.9 867,725 + -0.6 867,725 + +0.6 867,725 + +0.8 867,725 + +0.4 867,725 + +0.6 867,725 + +0.3 867,725 + +0.0 867,725 + -0.6 867,725 + -2.0 867,726 - -1.1 867,726 - -0.5 867,726 - -0.3 867,726 - +2.4 867,726 - +1.7 867,726 - +0.2 867,726 - -1.4 867,726 - +0.1 867,726 - -0.6 867,726 - -0.8 867,726 - -0.1 867,729 + +0.2 867,729 + -0.4 867,729 + -1.0 867,729 + -0.8 867,729 + +0.1 867,729 + -0.6 867,730 - -1.2 867,730 - -0.6 867,758 + -0.8 867,758 + +0.1 867,758 + +0.4 867,759 - +0.1 867,825 + Sama_0705 0.20 -0.8 867,882 - Sama_0705 0.49 +0.5 867,899 - Sama_0705 0.58 +0.4 867,933 + Sama_0705 0.75 +0.9 867,978 + -0.8 867,987 + -0.6 867,987 + -0.5 867,988 - -0.7 867,988 - +0.4 868,019 + -0.0 868,020 - -0.9 868,026 + -1.2 868,027 - +0.3 868,090 + +0.3 868,091 - +1.9 868,143 - Sama_0706 0.16 +0.0 868,182 + Sama_0706 0.20 +0.2 868,209 + Sama_0706 0.23 +0.1 868,209 + Sama_0706 0.23 -0.1 868,209 + Sama_0706 0.23 +0.1 868,210 - Sama_0706 0.23 +0.9 868,210 - Sama_0706 0.23 -0.2 868,224 + Sama_0706 0.25 -0.2 868,326 + Sama_0706 0.36 +0.5 868,326 + Sama_0706 0.36 +0.4 868,326 + Sama_0706 0.36 +2.6 868,327 - Sama_0706 0.36 +0.9 868,336 + Sama_0706 0.37 -0.0 868,336 + Sama_0706 0.37 +1.2 868,336 + Sama_0706 0.37 +0.6 868,337 - Sama_0706 0.37 +0.0 868,340 + Sama_0706 0.38 +0.2 868,475 - Sama_0706 0.53 -2.5 868,475 - Sama_0706 0.53 +1.2 868,475 - Sama_0706 0.53 +0.7 868,562 + Sama_0706 0.62 +0.1 868,562 + Sama_0706 0.62 -1.4 868,562 + Sama_0706 0.62 -0.1 868,562 + Sama_0706 0.62 -1.5 868,562 + Sama_0706 0.62 -0.5 868,563 - Sama_0706 0.62 -0.4 868,563 - Sama_0706 0.62 -1.4 868,563 - Sama_0706 0.62 -0.2 868,563 - Sama_0706 0.62 -1.1 868,563 - Sama_0706 0.62 +0.0 868,563 - Sama_0706 0.62 -0.8 868,563 - Sama_0706 0.62 -2.2 868,563 - Sama_0706 0.62 +0.8 868,568 + Sama_0706 0.63 +0.0 868,568 + Sama_0706 0.63 -0.5 868,569 - Sama_0706 0.63 -1.7 868,569 - Sama_0706 0.63 -0.3 868,569 - Sama_0706 0.63 +0.0 868,569 - Sama_0706 0.63 +0.1 868,569 - Sama_0706 0.63 +0.7 868,569 - Sama_0706 0.63 -0.6 868,569 - Sama_0706 0.63 +0.2 868,594 + Sama_0706 0.66 +0.9 868,594 + Sama_0706 0.66 +0.0 868,594 + Sama_0706 0.66 +0.2 868,594 + Sama_0706 0.66 +1.2 868,595 - Sama_0706 0.66 -0.4 868,612 + Sama_0706 0.68 -0.5 868,612 + Sama_0706 0.68 -1.2 868,623 + Sama_0706 0.69 +0.1 868,737 + Sama_0706 0.82 -0.8 868,738 - Sama_0706 0.82 +0.2 868,761 + Sama_0706 0.85 -0.2
Or see this region's nucleotide sequence