Strain Fitness in Shewanella amazonensis SB2B around Sama_0613

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0612 and Sama_0613 are separated by 67 nucleotidesSama_0613 and Sama_0614 are separated by 71 nucleotidesSama_0614 and Sama_0615 are separated by 94 nucleotides Sama_0612: Sama_0612 - D-lactate dehydrogenase (RefSeq), at 765,389 to 766,378 _0612 Sama_0613: Sama_0613 - dienelactone hydrolase (RefSeq), at 766,446 to 767,180 _0613 Sama_0614: Sama_0614 - hypothetical protein (RefSeq), at 767,252 to 767,887 _0614 Sama_0615: Sama_0615 - putative spermidine synthase (RefSeq), at 767,982 to 768,728 _0615 Position (kb) 766 767 768Strain fitness (log2 ratio) -2 -1 0 1 2 3at 765.466 kb on + strandat 765.466 kb on + strandat 765.466 kb on + strandat 765.466 kb on + strandat 765.467 kb on - strandat 765.474 kb on - strandat 765.515 kb on + strand, within Sama_0612at 765.515 kb on + strand, within Sama_0612at 765.516 kb on - strand, within Sama_0612at 765.516 kb on - strand, within Sama_0612at 765.516 kb on - strand, within Sama_0612at 765.543 kb on + strand, within Sama_0612at 765.543 kb on + strand, within Sama_0612at 765.661 kb on + strand, within Sama_0612at 765.661 kb on + strand, within Sama_0612at 765.661 kb on + strand, within Sama_0612at 765.661 kb on + strand, within Sama_0612at 765.661 kb on + strand, within Sama_0612at 765.662 kb on - strand, within Sama_0612at 765.662 kb on - strand, within Sama_0612at 765.670 kb on - strand, within Sama_0612at 765.686 kb on + strand, within Sama_0612at 765.759 kb on - strand, within Sama_0612at 765.759 kb on - strand, within Sama_0612at 765.808 kb on + strand, within Sama_0612at 765.808 kb on + strand, within Sama_0612at 765.809 kb on - strand, within Sama_0612at 765.809 kb on - strand, within Sama_0612at 765.837 kb on + strand, within Sama_0612at 765.837 kb on + strand, within Sama_0612at 765.837 kb on + strand, within Sama_0612at 765.838 kb on - strand, within Sama_0612at 765.865 kb on + strand, within Sama_0612at 765.866 kb on - strand, within Sama_0612at 765.872 kb on - strand, within Sama_0612at 765.872 kb on - strand, within Sama_0612at 765.872 kb on - strand, within Sama_0612at 765.872 kb on - strand, within Sama_0612at 765.930 kb on + strand, within Sama_0612at 765.930 kb on + strand, within Sama_0612at 765.950 kb on + strand, within Sama_0612at 765.987 kb on + strand, within Sama_0612at 765.988 kb on - strand, within Sama_0612at 765.988 kb on - strand, within Sama_0612at 765.988 kb on - strand, within Sama_0612at 765.988 kb on - strand, within Sama_0612at 766.167 kb on - strand, within Sama_0612at 766.227 kb on + strand, within Sama_0612at 766.228 kb on - strand, within Sama_0612at 766.228 kb on - strand, within Sama_0612at 766.315 kb on + strandat 766.315 kb on + strandat 766.316 kb on - strandat 766.411 kb on + strandat 766.411 kb on + strandat 766.411 kb on + strandat 766.411 kb on + strandat 766.412 kb on - strandat 766.412 kb on - strandat 766.472 kb on + strandat 766.473 kb on - strandat 766.473 kb on - strandat 766.478 kb on + strandat 766.479 kb on - strandat 766.479 kb on - strandat 766.529 kb on + strand, within Sama_0613at 766.529 kb on + strand, within Sama_0613at 766.530 kb on - strand, within Sama_0613at 766.533 kb on + strand, within Sama_0613at 766.534 kb on - strand, within Sama_0613at 766.653 kb on - strand, within Sama_0613at 766.653 kb on - strand, within Sama_0613at 766.685 kb on + strand, within Sama_0613at 766.685 kb on + strand, within Sama_0613at 766.686 kb on - strand, within Sama_0613at 766.718 kb on + strand, within Sama_0613at 766.839 kb on + strand, within Sama_0613at 766.884 kb on + strand, within Sama_0613at 766.884 kb on + strand, within Sama_0613at 766.885 kb on - strand, within Sama_0613at 766.885 kb on - strand, within Sama_0613at 766.885 kb on - strand, within Sama_0613at 766.912 kb on + strand, within Sama_0613at 766.912 kb on + strand, within Sama_0613at 766.912 kb on + strand, within Sama_0613at 766.912 kb on + strand, within Sama_0613at 766.913 kb on - strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.971 kb on + strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.972 kb on - strand, within Sama_0613at 766.973 kb on + strand, within Sama_0613at 766.973 kb on + strand, within Sama_0613at 766.973 kb on + strand, within Sama_0613at 766.973 kb on + strand, within Sama_0613at 766.974 kb on - strand, within Sama_0613at 766.974 kb on - strand, within Sama_0613at 766.974 kb on - strand, within Sama_0613at 766.974 kb on - strand, within Sama_0613at 767.093 kb on + strand, within Sama_0613at 767.094 kb on - strand, within Sama_0613at 767.138 kb on - strandat 767.138 kb on - strandat 767.142 kb on + strandat 767.142 kb on + strandat 767.142 kb on + strandat 767.142 kb on + strandat 767.143 kb on - strandat 767.143 kb on - strandat 767.143 kb on - strandat 767.143 kb on - strandat 767.156 kb on - strandat 767.182 kb on - strandat 767.182 kb on - strandat 767.227 kb on + strandat 767.228 kb on - strandat 767.305 kb on + strandat 767.305 kb on + strandat 767.305 kb on + strandat 767.360 kb on - strand, within Sama_0614at 767.394 kb on + strand, within Sama_0614at 767.395 kb on - strand, within Sama_0614at 767.395 kb on - strand, within Sama_0614at 767.395 kb on - strand, within Sama_0614at 767.395 kb on - strand, within Sama_0614at 767.395 kb on - strand, within Sama_0614at 767.411 kb on + strand, within Sama_0614at 767.412 kb on - strand, within Sama_0614at 767.416 kb on + strand, within Sama_0614at 767.416 kb on + strand, within Sama_0614at 767.416 kb on + strand, within Sama_0614at 767.416 kb on + strand, within Sama_0614at 767.416 kb on + strand, within Sama_0614at 767.451 kb on + strand, within Sama_0614at 767.482 kb on + strand, within Sama_0614at 767.482 kb on + strand, within Sama_0614at 767.483 kb on - strand, within Sama_0614at 767.525 kb on - strand, within Sama_0614at 767.591 kb on + strand, within Sama_0614at 767.591 kb on + strand, within Sama_0614at 767.591 kb on + strand, within Sama_0614at 767.591 kb on + strand, within Sama_0614at 767.591 kb on + strand, within Sama_0614at 767.592 kb on - strand, within Sama_0614at 767.608 kb on + strand, within Sama_0614at 767.688 kb on + strand, within Sama_0614at 767.728 kb on + strand, within Sama_0614at 767.728 kb on + strand, within Sama_0614at 767.729 kb on - strand, within Sama_0614at 767.738 kb on + strand, within Sama_0614at 767.738 kb on + strand, within Sama_0614at 767.812 kb on + strand, within Sama_0614at 767.836 kb on + strandat 767.837 kb on - strandat 767.837 kb on - strandat 767.837 kb on - strandat 767.841 kb on + strandat 767.842 kb on - strandat 767.842 kb on - strandat 767.842 kb on - strandat 767.856 kb on + strandat 767.857 kb on - strandat 767.873 kb on + strandat 767.874 kb on - strandat 767.887 kb on + strandat 767.890 kb on + strandat 767.891 kb on - strandat 767.891 kb on - strandat 767.891 kb on - strandat 767.923 kb on - strandat 767.927 kb on + strandat 767.928 kb on - strandat 767.928 kb on - strandat 767.999 kb on + strandat 768.000 kb on - strandat 768.003 kb on + strandat 768.004 kb on - strandat 768.020 kb on + strandat 768.020 kb on + strandat 768.020 kb on + strandat 768.021 kb on - strandat 768.021 kb on - strandat 768.021 kb on - strandat 768.021 kb on - strandat 768.132 kb on + strand, within Sama_0615at 768.132 kb on + strand, within Sama_0615at 768.132 kb on + strand, within Sama_0615at 768.132 kb on + strand, within Sama_0615at 768.133 kb on - strand, within Sama_0615at 768.133 kb on - strand, within Sama_0615

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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765,466 + -0.2
765,466 + -1.6
765,466 + -0.5
765,466 + +0.5
765,467 - -0.6
765,474 - -0.5
765,515 + Sama_0612 0.13 -1.9
765,515 + Sama_0612 0.13 +1.9
765,516 - Sama_0612 0.13 +0.8
765,516 - Sama_0612 0.13 +1.4
765,516 - Sama_0612 0.13 +1.3
765,543 + Sama_0612 0.16 +0.1
765,543 + Sama_0612 0.16 +1.1
765,661 + Sama_0612 0.27 +1.1
765,661 + Sama_0612 0.27 +0.4
765,661 + Sama_0612 0.27 +0.1
765,661 + Sama_0612 0.27 -1.7
765,661 + Sama_0612 0.27 -1.2
765,662 - Sama_0612 0.28 +1.5
765,662 - Sama_0612 0.28 +0.5
765,670 - Sama_0612 0.28 +0.8
765,686 + Sama_0612 0.30 +2.0
765,759 - Sama_0612 0.37 -0.1
765,759 - Sama_0612 0.37 +0.1
765,808 + Sama_0612 0.42 -0.0
765,808 + Sama_0612 0.42 -0.8
765,809 - Sama_0612 0.42 +0.3
765,809 - Sama_0612 0.42 +0.1
765,837 + Sama_0612 0.45 -0.2
765,837 + Sama_0612 0.45 -0.5
765,837 + Sama_0612 0.45 +0.0
765,838 - Sama_0612 0.45 +1.9
765,865 + Sama_0612 0.48 +0.1
765,866 - Sama_0612 0.48 +0.7
765,872 - Sama_0612 0.49 -0.3
765,872 - Sama_0612 0.49 +0.5
765,872 - Sama_0612 0.49 +1.3
765,872 - Sama_0612 0.49 -0.3
765,930 + Sama_0612 0.55 -2.3
765,930 + Sama_0612 0.55 +0.8
765,950 + Sama_0612 0.57 -0.9
765,987 + Sama_0612 0.60 -0.1
765,988 - Sama_0612 0.61 -0.9
765,988 - Sama_0612 0.61 +0.9
765,988 - Sama_0612 0.61 +0.5
765,988 - Sama_0612 0.61 -1.0
766,167 - Sama_0612 0.79 +0.9
766,227 + Sama_0612 0.85 -1.7
766,228 - Sama_0612 0.85 -0.7
766,228 - Sama_0612 0.85 -0.1
766,315 + +1.1
766,315 + -0.4
766,316 - -0.5
766,411 + +0.6
766,411 + -0.4
766,411 + +0.6
766,411 + +1.3
766,412 - -0.3
766,412 - +0.4
766,472 + -0.6
766,473 - -1.3
766,473 - +0.0
766,478 + +0.2
766,479 - +0.2
766,479 - +1.1
766,529 + Sama_0613 0.11 -0.2
766,529 + Sama_0613 0.11 +1.3
766,530 - Sama_0613 0.11 +0.5
766,533 + Sama_0613 0.12 +0.5
766,534 - Sama_0613 0.12 +0.6
766,653 - Sama_0613 0.28 +1.3
766,653 - Sama_0613 0.28 +2.6
766,685 + Sama_0613 0.33 -0.5
766,685 + Sama_0613 0.33 -0.2
766,686 - Sama_0613 0.33 -0.7
766,718 + Sama_0613 0.37 +0.7
766,839 + Sama_0613 0.53 +0.3
766,884 + Sama_0613 0.60 +0.3
766,884 + Sama_0613 0.60 +1.5
766,885 - Sama_0613 0.60 -0.6
766,885 - Sama_0613 0.60 +0.9
766,885 - Sama_0613 0.60 +1.9
766,912 + Sama_0613 0.63 -0.0
766,912 + Sama_0613 0.63 -0.8
766,912 + Sama_0613 0.63 -1.2
766,912 + Sama_0613 0.63 -0.2
766,913 - Sama_0613 0.64 -0.3
766,971 + Sama_0613 0.71 -1.3
766,971 + Sama_0613 0.71 -1.3
766,971 + Sama_0613 0.71 +0.3
766,971 + Sama_0613 0.71 +1.1
766,971 + Sama_0613 0.71 -0.5
766,971 + Sama_0613 0.71 +0.1
766,971 + Sama_0613 0.71 -0.9
766,971 + Sama_0613 0.71 -0.3
766,971 + Sama_0613 0.71 +2.1
766,971 + Sama_0613 0.71 +1.4
766,972 - Sama_0613 0.72 +0.2
766,972 - Sama_0613 0.72 +0.3
766,972 - Sama_0613 0.72 +0.7
766,972 - Sama_0613 0.72 +0.2
766,972 - Sama_0613 0.72 +0.9
766,972 - Sama_0613 0.72 -0.0
766,972 - Sama_0613 0.72 +1.0
766,972 - Sama_0613 0.72 +0.7
766,972 - Sama_0613 0.72 -0.1
766,972 - Sama_0613 0.72 -0.0
766,972 - Sama_0613 0.72 -0.3
766,973 + Sama_0613 0.72 -0.0
766,973 + Sama_0613 0.72 +0.1
766,973 + Sama_0613 0.72 +0.3
766,973 + Sama_0613 0.72 -0.5
766,974 - Sama_0613 0.72 -0.0
766,974 - Sama_0613 0.72 +0.3
766,974 - Sama_0613 0.72 +0.1
766,974 - Sama_0613 0.72 +0.5
767,093 + Sama_0613 0.88 -0.5
767,094 - Sama_0613 0.88 +0.3
767,138 - +0.1
767,138 - +2.9
767,142 + -0.5
767,142 + +0.6
767,142 + -0.1
767,142 + +0.3
767,143 - +0.7
767,143 - -1.5
767,143 - -0.1
767,143 - -0.1
767,156 - +0.1
767,182 - +2.0
767,182 - -0.3
767,227 + -0.0
767,228 - +0.3
767,305 + +0.1
767,305 + +0.9
767,305 + +1.7
767,360 - Sama_0614 0.17 +0.9
767,394 + Sama_0614 0.22 +0.3
767,395 - Sama_0614 0.22 -0.5
767,395 - Sama_0614 0.22 +1.0
767,395 - Sama_0614 0.22 +0.3
767,395 - Sama_0614 0.22 -0.2
767,395 - Sama_0614 0.22 +0.2
767,411 + Sama_0614 0.25 +0.1
767,412 - Sama_0614 0.25 -0.0
767,416 + Sama_0614 0.26 +0.3
767,416 + Sama_0614 0.26 +0.1
767,416 + Sama_0614 0.26 +0.4
767,416 + Sama_0614 0.26 -0.5
767,416 + Sama_0614 0.26 +0.6
767,451 + Sama_0614 0.31 -0.5
767,482 + Sama_0614 0.36 -0.1
767,482 + Sama_0614 0.36 +0.3
767,483 - Sama_0614 0.36 -0.5
767,525 - Sama_0614 0.43 +0.6
767,591 + Sama_0614 0.53 -1.7
767,591 + Sama_0614 0.53 +0.6
767,591 + Sama_0614 0.53 -0.0
767,591 + Sama_0614 0.53 +1.0
767,591 + Sama_0614 0.53 -0.1
767,592 - Sama_0614 0.53 -0.1
767,608 + Sama_0614 0.56 +0.3
767,688 + Sama_0614 0.69 +0.1
767,728 + Sama_0614 0.75 -0.8
767,728 + Sama_0614 0.75 -0.7
767,729 - Sama_0614 0.75 -0.1
767,738 + Sama_0614 0.76 +0.6
767,738 + Sama_0614 0.76 +0.3
767,812 + Sama_0614 0.88 -0.5
767,836 + +0.1
767,837 - -1.5
767,837 - +0.3
767,837 - -0.8
767,841 + +0.5
767,842 - +0.6
767,842 - -1.3
767,842 - +1.0
767,856 + +0.4
767,857 - -0.5
767,873 + -0.1
767,874 - +1.9
767,887 + -0.9
767,890 + +0.2
767,891 - +1.3
767,891 - +0.3
767,891 - +0.0
767,923 - -0.3
767,927 + +0.1
767,928 - -0.6
767,928 - +0.7
767,999 + +0.3
768,000 - +2.3
768,003 + +0.5
768,004 - +1.7
768,020 + +0.0
768,020 + +2.1
768,020 + -0.3
768,021 - -1.2
768,021 - -0.5
768,021 - -0.8
768,021 - -0.5
768,132 + Sama_0615 0.20 -0.9
768,132 + Sama_0615 0.20 -0.2
768,132 + Sama_0615 0.20 -0.0
768,132 + Sama_0615 0.20 -1.3
768,133 - Sama_0615 0.20 +1.1
768,133 - Sama_0615 0.20 -0.4

Or see this region's nucleotide sequence