Experiment: D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mogA and Sama_0069 are separated by 46 nucleotides Sama_0069 and Sama_0070 are separated by 43 nucleotides Sama_0070 and Sama_0071 are separated by 23 nucleotides Sama_0071 and pbpG are separated by 1 nucleotides
Sama_0068: mogA - molybdenum cofactor biosynthesis protein (RefSeq), at 75,976 to 76,506
mogA
Sama_0069: Sama_0069 - NLP/P60 family lipoprotein (RefSeq), at 76,553 to 76,999
_0069
Sama_0070: Sama_0070 - hypothetical protein (RefSeq), at 77,043 to 77,630
_0070
Sama_0071: Sama_0071 - hypothetical protein (RefSeq), at 77,654 to 77,893
_0071
Sama_0072: pbpG - D-alanyl-D-alanine endopeptidase (RefSeq), at 77,895 to 78,806
pbpG
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.059 kb on + strand, within mogA at 76.059 kb on + strand, within mogA at 76.060 kb on - strand, within mogA at 76.060 kb on - strand, within mogA at 76.060 kb on - strand, within mogA at 76.078 kb on + strand, within mogA at 76.078 kb on + strand, within mogA at 76.105 kb on + strand, within mogA at 76.105 kb on + strand, within mogA at 76.105 kb on + strand, within mogA at 76.106 kb on - strand, within mogA at 76.106 kb on - strand, within mogA at 76.106 kb on - strand, within mogA at 76.136 kb on + strand, within mogA at 76.136 kb on + strand, within mogA at 76.136 kb on + strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.318 kb on - strand, within mogA at 76.318 kb on - strand, within mogA at 76.361 kb on + strand, within mogA at 76.362 kb on - strand, within mogA at 76.429 kb on + strand, within mogA at 76.429 kb on + strand, within mogA at 76.430 kb on - strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.479 kb on + strand at 76.479 kb on + strand at 76.479 kb on + strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.623 kb on + strand, within Sama_0069 at 76.623 kb on + strand, within Sama_0069 at 76.623 kb on + strand, within Sama_0069 at 76.624 kb on - strand, within Sama_0069 at 76.661 kb on + strand, within Sama_0069 at 76.661 kb on + strand, within Sama_0069 at 76.662 kb on - strand, within Sama_0069 at 76.662 kb on - strand, within Sama_0069 at 76.685 kb on + strand, within Sama_0069 at 76.686 kb on - strand, within Sama_0069 at 76.686 kb on - strand, within Sama_0069 at 76.705 kb on + strand, within Sama_0069 at 76.706 kb on - strand, within Sama_0069 at 76.706 kb on - strand, within Sama_0069 at 76.746 kb on - strand, within Sama_0069 at 76.813 kb on - strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.958 kb on + strand at 76.959 kb on - strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.991 kb on + strand at 76.992 kb on - strand at 76.992 kb on - strand at 76.992 kb on - strand at 77.041 kb on + strand at 77.042 kb on - strand at 77.042 kb on - strand at 77.106 kb on + strand, within Sama_0070 at 77.120 kb on + strand, within Sama_0070 at 77.121 kb on - strand, within Sama_0070 at 77.168 kb on + strand, within Sama_0070 at 77.200 kb on + strand, within Sama_0070 at 77.200 kb on + strand, within Sama_0070 at 77.201 kb on - strand, within Sama_0070 at 77.201 kb on - strand, within Sama_0070 at 77.300 kb on + strand, within Sama_0070 at 77.372 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.456 kb on - strand, within Sama_0070 at 77.456 kb on - strand, within Sama_0070 at 77.505 kb on + strand, within Sama_0070 at 77.506 kb on - strand, within Sama_0070 at 77.506 kb on - strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.556 kb on - strand, within Sama_0070 at 77.556 kb on - strand, within Sama_0070 at 77.622 kb on + strand at 77.622 kb on + strand at 77.622 kb on + strand at 77.622 kb on + strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.655 kb on + strand at 77.655 kb on + strand at 77.656 kb on - strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.674 kb on - strand at 77.674 kb on - strand at 77.674 kb on - strand at 77.797 kb on + strand, within Sama_0071 at 77.797 kb on + strand, within Sama_0071 at 77.797 kb on + strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.817 kb on + strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.852 kb on + strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.872 kb on + strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.890 kb on - strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.907 kb on - strand at 77.907 kb on - strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.910 kb on - strand at 77.910 kb on - strand at 77.933 kb on + strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.935 kb on + strand at 77.936 kb on - strand at 77.936 kb on - strand at 77.936 kb on - strand at 78.123 kb on + strand, within pbpG at 78.169 kb on + strand, within pbpG at 78.170 kb on - strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.240 kb on + strand, within pbpG at 78.247 kb on + strand, within pbpG at 78.248 kb on - strand, within pbpG at 78.290 kb on + strand, within pbpG at 78.303 kb on + strand, within pbpG at 78.344 kb on + strand, within pbpG at 78.391 kb on + strand, within pbpG at 78.392 kb on - strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.618 kb on - strand, within pbpG
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate remove 76,059 + mogA Sama_0068 0.16 -0.9 76,059 + mogA Sama_0068 0.16 +0.3 76,060 - mogA Sama_0068 0.16 -0.7 76,060 - mogA Sama_0068 0.16 -0.2 76,060 - mogA Sama_0068 0.16 +1.4 76,078 + mogA Sama_0068 0.19 +0.4 76,078 + mogA Sama_0068 0.19 -0.7 76,105 + mogA Sama_0068 0.24 -2.2 76,105 + mogA Sama_0068 0.24 -1.3 76,105 + mogA Sama_0068 0.24 -0.1 76,106 - mogA Sama_0068 0.24 +0.8 76,106 - mogA Sama_0068 0.24 -0.4 76,106 - mogA Sama_0068 0.24 +0.9 76,136 + mogA Sama_0068 0.30 +0.1 76,136 + mogA Sama_0068 0.30 +0.1 76,136 + mogA Sama_0068 0.30 -1.2 76,137 - mogA Sama_0068 0.30 -0.1 76,137 - mogA Sama_0068 0.30 +1.0 76,137 - mogA Sama_0068 0.30 +0.1 76,137 - mogA Sama_0068 0.30 +0.5 76,137 - mogA Sama_0068 0.30 -0.5 76,137 - mogA Sama_0068 0.30 +0.0 76,317 + mogA Sama_0068 0.64 +1.8 76,317 + mogA Sama_0068 0.64 -0.5 76,317 + mogA Sama_0068 0.64 -0.0 76,317 + mogA Sama_0068 0.64 -0.3 76,317 + mogA Sama_0068 0.64 +0.7 76,318 - mogA Sama_0068 0.64 +0.2 76,318 - mogA Sama_0068 0.64 -0.3 76,361 + mogA Sama_0068 0.73 +0.7 76,362 - mogA Sama_0068 0.73 -0.4 76,429 + mogA Sama_0068 0.85 +2.4 76,429 + mogA Sama_0068 0.85 +0.5 76,430 - mogA Sama_0068 0.85 -0.9 76,434 + mogA Sama_0068 0.86 +1.6 76,434 + mogA Sama_0068 0.86 -0.6 76,434 + mogA Sama_0068 0.86 -1.6 76,434 + mogA Sama_0068 0.86 -0.9 76,434 + mogA Sama_0068 0.86 +0.2 76,435 - mogA Sama_0068 0.86 -0.3 76,435 - mogA Sama_0068 0.86 +0.6 76,435 - mogA Sama_0068 0.86 +0.0 76,435 - mogA Sama_0068 0.86 +1.3 76,435 - mogA Sama_0068 0.86 +1.0 76,479 + +2.2 76,479 + +0.0 76,479 + -0.7 76,480 - -1.7 76,480 - +0.9 76,480 - +1.6 76,623 + Sama_0069 0.16 -0.1 76,623 + Sama_0069 0.16 -0.3 76,623 + Sama_0069 0.16 -0.4 76,624 - Sama_0069 0.16 -0.5 76,661 + Sama_0069 0.24 -0.2 76,661 + Sama_0069 0.24 -0.4 76,662 - Sama_0069 0.24 +1.0 76,662 - Sama_0069 0.24 -0.4 76,685 + Sama_0069 0.30 +2.6 76,686 - Sama_0069 0.30 -1.9 76,686 - Sama_0069 0.30 +0.0 76,705 + Sama_0069 0.34 +0.0 76,706 - Sama_0069 0.34 -0.4 76,706 - Sama_0069 0.34 +0.1 76,746 - Sama_0069 0.43 -2.1 76,813 - Sama_0069 0.58 +1.2 76,827 + Sama_0069 0.61 +0.2 76,827 + Sama_0069 0.61 -1.2 76,827 + Sama_0069 0.61 +0.9 76,827 + Sama_0069 0.61 -0.2 76,827 + Sama_0069 0.61 +0.6 76,827 + Sama_0069 0.61 -0.5 76,827 + Sama_0069 0.61 +0.0 76,827 + Sama_0069 0.61 -1.2 76,828 - Sama_0069 0.62 -0.7 76,828 - Sama_0069 0.62 -0.1 76,828 - Sama_0069 0.62 -0.6 76,828 - Sama_0069 0.62 -0.8 76,828 - Sama_0069 0.62 -0.1 76,958 + -0.1 76,959 - +1.1 76,983 + +0.0 76,983 + -0.7 76,983 + -0.8 76,983 + -0.1 76,983 + +0.4 76,983 + -0.2 76,984 - +0.6 76,984 - -1.0 76,984 - -1.5 76,991 + +0.1 76,992 - +0.5 76,992 - +0.6 76,992 - -0.0 77,041 + -2.4 77,042 - -0.1 77,042 - +2.3 77,106 + Sama_0070 0.11 +0.0 77,120 + Sama_0070 0.13 +0.8 77,121 - Sama_0070 0.13 +0.6 77,168 + Sama_0070 0.21 -0.3 77,200 + Sama_0070 0.27 -0.7 77,200 + Sama_0070 0.27 -0.8 77,201 - Sama_0070 0.27 -0.5 77,201 - Sama_0070 0.27 +1.6 77,300 + Sama_0070 0.44 -2.1 77,372 + Sama_0070 0.56 -1.0 77,436 + Sama_0070 0.67 -1.4 77,436 + Sama_0070 0.67 +0.3 77,436 + Sama_0070 0.67 -0.2 77,436 + Sama_0070 0.67 -1.2 77,436 + Sama_0070 0.67 -1.5 77,436 + Sama_0070 0.67 -0.5 77,442 + Sama_0070 0.68 +0.3 77,442 + Sama_0070 0.68 +0.6 77,442 + Sama_0070 0.68 -0.2 77,442 + Sama_0070 0.68 +1.0 77,442 + Sama_0070 0.68 -0.6 77,442 + Sama_0070 0.68 -0.2 77,442 + Sama_0070 0.68 -0.5 77,442 + Sama_0070 0.68 -0.6 77,443 - Sama_0070 0.68 -0.3 77,443 - Sama_0070 0.68 -0.4 77,443 - Sama_0070 0.68 -0.7 77,443 - Sama_0070 0.68 -2.0 77,443 - Sama_0070 0.68 -1.6 77,443 - Sama_0070 0.68 -1.3 77,443 - Sama_0070 0.68 -1.0 77,443 - Sama_0070 0.68 +1.1 77,456 - Sama_0070 0.70 -0.7 77,456 - Sama_0070 0.70 -1.1 77,505 + Sama_0070 0.79 +0.2 77,506 - Sama_0070 0.79 +1.0 77,506 - Sama_0070 0.79 -1.9 77,555 + Sama_0070 0.87 -0.5 77,555 + Sama_0070 0.87 +0.1 77,555 + Sama_0070 0.87 -0.9 77,556 - Sama_0070 0.87 +0.7 77,556 - Sama_0070 0.87 -0.0 77,622 + +0.7 77,622 + +1.0 77,622 + -0.7 77,622 + -0.3 77,623 - -0.9 77,623 - -0.6 77,623 - -0.5 77,623 - +0.5 77,623 - +1.9 77,623 - -0.2 77,655 + -1.1 77,655 + -0.7 77,656 - -0.9 77,673 + +1.2 77,673 + -1.9 77,673 + -0.4 77,673 + -1.0 77,673 + -0.2 77,674 - -0.9 77,674 - +1.5 77,674 - +1.9 77,797 + Sama_0071 0.60 +0.0 77,797 + Sama_0071 0.60 -0.6 77,797 + Sama_0071 0.60 +0.2 77,798 - Sama_0071 0.60 -1.2 77,798 - Sama_0071 0.60 -0.0 77,798 - Sama_0071 0.60 +0.7 77,817 + Sama_0071 0.68 -0.5 77,818 - Sama_0071 0.68 -0.7 77,818 - Sama_0071 0.68 +0.6 77,818 - Sama_0071 0.68 -0.2 77,852 + Sama_0071 0.82 +0.4 77,853 - Sama_0071 0.83 -0.4 77,853 - Sama_0071 0.83 +0.3 77,853 - Sama_0071 0.83 -0.4 77,858 + Sama_0071 0.85 +0.7 77,858 + Sama_0071 0.85 -0.7 77,858 + Sama_0071 0.85 -0.3 77,872 + -0.3 77,873 - +0.0 77,873 - +1.1 77,873 - -0.1 77,890 - +2.2 77,896 + +1.8 77,896 + +0.1 77,896 + -0.0 77,896 + -2.0 77,896 + +0.3 77,896 + +1.3 77,897 - +0.4 77,897 - +0.1 77,897 - -1.3 77,897 - +1.1 77,906 + +1.1 77,906 + +1.0 77,906 + -0.8 77,906 + +0.7 77,906 + +0.1 77,907 - -0.4 77,907 - +0.2 77,909 + +0.1 77,909 + +0.6 77,909 + +0.4 77,909 + +1.2 77,910 - -1.4 77,910 - -0.7 77,933 + -0.3 77,934 - -0.6 77,934 - -0.2 77,934 - -0.3 77,934 - -2.6 77,934 - -1.2 77,934 - -0.5 77,935 + -0.1 77,936 - -0.1 77,936 - +0.2 77,936 - -0.7 78,123 + pbpG Sama_0072 0.25 -0.4 78,169 + pbpG Sama_0072 0.30 +0.8 78,170 - pbpG Sama_0072 0.30 -0.6 78,184 + pbpG Sama_0072 0.32 -0.4 78,184 + pbpG Sama_0072 0.32 +2.4 78,184 + pbpG Sama_0072 0.32 -0.2 78,184 + pbpG Sama_0072 0.32 +0.5 78,185 - pbpG Sama_0072 0.32 +0.2 78,185 - pbpG Sama_0072 0.32 +0.0 78,212 + pbpG Sama_0072 0.35 +2.6 78,212 + pbpG Sama_0072 0.35 -1.4 78,212 + pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 -1.4 78,213 - pbpG Sama_0072 0.35 -0.1 78,213 - pbpG Sama_0072 0.35 -0.2 78,213 - pbpG Sama_0072 0.35 -0.1 78,213 - pbpG Sama_0072 0.35 -0.4 78,213 - pbpG Sama_0072 0.35 +0.0 78,213 - pbpG Sama_0072 0.35 -0.4 78,213 - pbpG Sama_0072 0.35 -0.9 78,213 - pbpG Sama_0072 0.35 -0.4 78,213 - pbpG Sama_0072 0.35 -0.1 78,240 + pbpG Sama_0072 0.38 +1.0 78,247 + pbpG Sama_0072 0.39 -0.7 78,248 - pbpG Sama_0072 0.39 -0.4 78,290 + pbpG Sama_0072 0.43 -0.3 78,303 + pbpG Sama_0072 0.45 +0.8 78,344 + pbpG Sama_0072 0.49 -0.7 78,391 + pbpG Sama_0072 0.54 +1.1 78,392 - pbpG Sama_0072 0.54 -1.0 78,617 + pbpG Sama_0072 0.79 -1.9 78,617 + pbpG Sama_0072 0.79 -0.2 78,617 + pbpG Sama_0072 0.79 -0.1 78,618 - pbpG Sama_0072 0.79 +0.3
Or see this region's nucleotide sequence