Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0657 and SO0658 overlap by 4 nucleotides SO0658 and SO0659 overlap by 11 nucleotides SO0659 and SO0660 overlap by 40 nucleotides SO0660 and SO0661 are separated by 96 nucleotides SO0661 and SO0662 overlap by 4 nucleotides
SO0657: SO0657 - ISSod1, transposase OrfB (NCBI ptt file), at 679,457 to 680,266
SO0657
SO0658: SO0658 - hypothetical protein (NCBI ptt file), at 680,263 to 680,646
SO0658
SO0659: SO0659 - lysozyme, putative (NCBI ptt file), at 680,636 to 681,193
SO0659
SO0660: SO0660 - hypothetical protein (NCBI ptt file), at 681,154 to 681,759
SO0660
SO0661: SO0661 - zinc finger-related protein (NCBI ptt file), at 681,856 to 682,068
SO0661
SO0662: SO0662 - conserved hypothetical protein (NCBI ptt file), at 682,065 to 682,412
SO0662
Position (kb) 680
681
682 Strain fitness (log2 ratio) -1
0
1 at 680.265 kb on + strand at 680.275 kb on + strand at 680.305 kb on + strand, within SO0658 at 680.316 kb on - strand, within SO0658 at 680.399 kb on + strand, within SO0658 at 680.407 kb on - strand, within SO0658 at 680.463 kb on - strand, within SO0658 at 680.476 kb on - strand, within SO0658 at 680.483 kb on - strand, within SO0658 at 680.483 kb on - strand, within SO0658 at 680.550 kb on - strand, within SO0658 at 680.560 kb on - strand, within SO0658 at 680.565 kb on - strand, within SO0658 at 680.620 kb on + strand at 680.621 kb on + strand at 680.629 kb on - strand at 680.647 kb on + strand at 680.680 kb on - strand at 680.712 kb on - strand, within SO0659 at 680.751 kb on + strand, within SO0659 at 680.793 kb on + strand, within SO0659 at 680.812 kb on - strand, within SO0659 at 680.819 kb on - strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.900 kb on - strand, within SO0659 at 680.900 kb on - strand, within SO0659 at 680.967 kb on + strand, within SO0659 at 680.967 kb on + strand, within SO0659 at 681.026 kb on + strand, within SO0659 at 681.034 kb on - strand, within SO0659 at 681.034 kb on - strand, within SO0659 at 681.082 kb on - strand, within SO0659 at 681.099 kb on + strand, within SO0659 at 681.124 kb on + strand, within SO0659 at 681.252 kb on + strand, within SO0660 at 681.325 kb on - strand, within SO0660 at 681.443 kb on + strand, within SO0660 at 681.450 kb on + strand, within SO0660 at 681.614 kb on + strand, within SO0660 at 681.622 kb on - strand, within SO0660 at 681.622 kb on - strand, within SO0660 at 681.643 kb on - strand, within SO0660 at 681.656 kb on - strand, within SO0660 at 681.769 kb on + strand at 681.777 kb on - strand at 681.791 kb on - strand at 681.819 kb on - strand at 681.881 kb on + strand, within SO0661 at 681.937 kb on + strand, within SO0661 at 681.951 kb on + strand, within SO0661 at 681.973 kb on - strand, within SO0661 at 682.050 kb on - strand at 682.154 kb on + strand, within SO0662
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 680,265 + +1.0 680,275 + -0.2 680,305 + SO0658 0.11 -0.1 680,316 - SO0658 0.14 -1.1 680,399 + SO0658 0.35 +0.3 680,407 - SO0658 0.38 +0.4 680,463 - SO0658 0.52 +0.4 680,476 - SO0658 0.55 +0.1 680,483 - SO0658 0.57 -0.2 680,483 - SO0658 0.57 +0.3 680,550 - SO0658 0.75 +0.6 680,560 - SO0658 0.77 +0.1 680,565 - SO0658 0.79 +0.7 680,620 + +0.0 680,621 + +0.1 680,629 - +1.0 680,647 + -0.1 680,680 - +0.2 680,712 - SO0659 0.14 +0.2 680,751 + SO0659 0.21 -0.2 680,793 + SO0659 0.28 -0.2 680,812 - SO0659 0.32 -0.0 680,819 - SO0659 0.33 +0.3 680,892 + SO0659 0.46 -0.6 680,892 + SO0659 0.46 -0.5 680,892 + SO0659 0.46 -0.3 680,892 + SO0659 0.46 +0.4 680,892 + SO0659 0.46 -0.1 680,900 - SO0659 0.47 -0.6 680,900 - SO0659 0.47 -0.6 680,967 + SO0659 0.59 -1.3 680,967 + SO0659 0.59 +0.1 681,026 + SO0659 0.70 +0.1 681,034 - SO0659 0.71 -0.4 681,034 - SO0659 0.71 -1.0 681,082 - SO0659 0.80 -0.0 681,099 + SO0659 0.83 -0.6 681,124 + SO0659 0.87 -1.3 681,252 + SO0660 0.16 -0.9 681,325 - SO0660 0.28 +0.7 681,443 + SO0660 0.48 +0.1 681,450 + SO0660 0.49 -1.0 681,614 + SO0660 0.76 +0.1 681,622 - SO0660 0.77 -0.4 681,622 - SO0660 0.77 +0.1 681,643 - SO0660 0.81 +0.9 681,656 - SO0660 0.83 +0.3 681,769 + -0.1 681,777 - -0.0 681,791 - +0.6 681,819 - +0.1 681,881 + SO0661 0.12 +0.2 681,937 + SO0661 0.38 +0.5 681,951 + SO0661 0.45 -0.3 681,973 - SO0661 0.55 +0.0 682,050 - +0.8 682,154 + SO0662 0.26 -0.4
Or see this region's nucleotide sequence