Strain Fitness in Shewanella oneidensis MR-1 around SO0070

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
80,943	-		SO0069	0.24	-0.1
81,021	-		SO0069	0.31	-0.3
81,021	-		SO0069	0.31	+0.3
81,061	+		SO0069	0.35	+0.6
81,062	+		SO0069	0.35	+0.4
81,069	+		SO0069	0.35	+0.3
81,069	+		SO0069	0.35	+0.1
81,069	+		SO0069	0.35	+0.4
81,077	-		SO0069	0.36	-0.1
81,077	-		SO0069	0.36	-0.4
81,170	+		SO0069	0.44	+0.5
81,196	-		SO0069	0.46	+0.1
81,204	-		SO0069	0.47	-0.6
81,220	-		SO0069	0.49	+0.1
81,237	+		SO0069	0.50	-0.8
81,249	+		SO0069	0.51	-0.2
81,257	-		SO0069	0.52	-0.3
81,257	-		SO0069	0.52	+0.3
81,257	-		SO0069	0.52	+1.3
81,267	-		SO0069	0.53	+0.4
81,313	+		SO0069	0.57	-0.1
81,321	-		SO0069	0.57	+0.3
81,406	+		SO0069	0.65	-0.5
81,414	-		SO0069	0.66	-1.6
81,414	-		SO0069	0.66	-1.0
81,498	+		SO0069	0.73	-0.6
81,521	+		SO0069	0.75	-0.4
81,529	-		SO0069	0.76	-0.1
81,555	-		SO0069	0.78	+0.1
81,581	-		SO0069	0.80	-0.2
81,586	-		SO0069	0.81	+0.6
81,666	-		SO0069	0.88	-0.1
81,697	+				+0.1
81,705	-				+0.0
81,729	-				+2.6
81,771	-				-0.2
81,771	-				+0.5
81,876	+				-0.0
81,919	-				-0.1
81,939	-				-0.2
81,964	-				-0.5
81,977	+				+0.6
81,982	+	natA	SO0070	0.11	+0.7
82,008	+	natA	SO0070	0.14	+0.1
82,010	+	natA	SO0070	0.14	-0.3
82,015	+	natA	SO0070	0.15	-1.0
82,015	+	natA	SO0070	0.15	+0.0
82,023	-	natA	SO0070	0.16	-0.2
82,035	+	natA	SO0070	0.18	-0.4
82,124	-	natA	SO0070	0.30	-1.4
82,146	+	natA	SO0070	0.33	+0.4
82,192	+	natA	SO0070	0.39	-0.2
82,376	-	natA	SO0070	0.64	-0.3
82,376	-	natA	SO0070	0.64	-0.3
82,427	-	natA	SO0070	0.71	+0.5
82,489	-	natA	SO0070	0.80	-0.7
82,534	-	natA	SO0070	0.86	-1.6
82,591	+				-1.0
82,599	-				+1.2
82,665	-				+1.0
82,677	-				-0.6
82,711	-				+0.4
82,844	-		SO0071	0.13	+0.0
82,844	-		SO0071	0.13	-0.5
82,915	+		SO0071	0.17	-0.6
82,936	+		SO0071	0.18	+1.2
82,949	-		SO0071	0.19	-0.1
82,961	+		SO0071	0.20	-0.0
82,961	+		SO0071	0.20	-0.7
82,961	+		SO0071	0.20	+0.1
82,963	+		SO0071	0.20	-0.1
82,969	-		SO0071	0.20	+0.0
82,971	-		SO0071	0.20	+0.1
82,993	-		SO0071	0.22	+0.2
83,216	-		SO0071	0.35	+1.6
83,237	+		SO0071	0.37	+0.1
83,237	+		SO0071	0.37	-0.2
83,245	-		SO0071	0.37	-0.5
83,245	-		SO0071	0.37	-0.2
83,319	+		SO0071	0.42	+0.4
83,319	+		SO0071	0.42	-0.0
83,380	-		SO0071	0.46	-0.4
83,380	-		SO0071	0.46	-0.1
83,398	+		SO0071	0.47	-0.4
83,398	+		SO0071	0.47	+0.1
83,398	+		SO0071	0.47	-0.9
83,406	-		SO0071	0.47	+0.1
83,513	+		SO0071	0.54	+0.1
83,513	+		SO0071	0.54	-0.4
83,521	-		SO0071	0.54	-0.3
83,523	+		SO0071	0.54	-0.2
83,559	-		SO0071	0.57	+0.1
83,568	+		SO0071	0.57	-1.0