Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0066 and SO0067 overlap by 4 nucleotides SO0067 and SO0068 are separated by 24 nucleotides SO0068 and SO0069 are separated by 57 nucleotides
SO0066: SO0066 - conserved hypothetical protein (NCBI ptt file), at 72,364 to 78,060
SO0066
SO0067: SO0067 - penicillin-binding protein 1C, putative (NCBI ptt file), at 78,057 to 80,339
SO0067
SO0068: SO0068 - hypothetical protein (NCBI ptt file), at 80,364 to 80,609
SO0068
SO0069: SO0069 - transport protein, putative (NCBI ptt file), at 80,667 to 81,806
SO0069
Position (kb) 78
79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 77.092 kb on - strand, within SO0066 at 77.121 kb on + strand, within SO0066 at 77.121 kb on + strand, within SO0066 at 77.129 kb on - strand, within SO0066 at 77.129 kb on - strand, within SO0066 at 77.242 kb on - strand, within SO0066 at 77.301 kb on + strand, within SO0066 at 77.301 kb on + strand, within SO0066 at 77.301 kb on + strand, within SO0066 at 77.304 kb on - strand, within SO0066 at 77.309 kb on - strand, within SO0066 at 77.309 kb on - strand, within SO0066 at 77.309 kb on - strand, within SO0066 at 77.309 kb on - strand, within SO0066 at 77.309 kb on - strand, within SO0066 at 77.310 kb on - strand, within SO0066 at 77.364 kb on + strand, within SO0066 at 77.424 kb on + strand, within SO0066 at 77.424 kb on + strand, within SO0066 at 77.432 kb on - strand, within SO0066 at 77.549 kb on + strand at 77.549 kb on + strand at 77.549 kb on + strand at 77.557 kb on - strand at 77.592 kb on + strand at 77.592 kb on + strand at 77.600 kb on - strand at 77.619 kb on - strand at 77.630 kb on + strand at 77.630 kb on + strand at 77.630 kb on + strand at 77.630 kb on + strand at 77.630 kb on + strand at 77.651 kb on + strand at 77.699 kb on + strand at 77.699 kb on + strand at 77.820 kb on - strand at 77.987 kb on + strand at 77.987 kb on + strand at 78.000 kb on + strand at 78.000 kb on + strand at 78.106 kb on + strand at 78.106 kb on + strand at 78.106 kb on + strand at 78.106 kb on + strand at 78.106 kb on + strand at 78.113 kb on + strand at 78.113 kb on + strand at 78.114 kb on - strand at 78.114 kb on - strand at 78.114 kb on - strand at 78.121 kb on - strand at 78.121 kb on - strand at 78.159 kb on - strand at 78.169 kb on - strand at 78.195 kb on + strand at 78.195 kb on + strand at 78.195 kb on + strand at 78.203 kb on - strand at 78.203 kb on - strand at 78.203 kb on - strand at 78.223 kb on - strand at 78.301 kb on + strand, within SO0067 at 78.307 kb on + strand, within SO0067 at 78.322 kb on + strand, within SO0067 at 78.429 kb on + strand, within SO0067 at 78.432 kb on - strand, within SO0067 at 78.442 kb on - strand, within SO0067 at 78.452 kb on - strand, within SO0067 at 78.497 kb on + strand, within SO0067 at 78.505 kb on - strand, within SO0067 at 78.509 kb on + strand, within SO0067 at 78.515 kb on - strand, within SO0067 at 78.515 kb on - strand, within SO0067 at 78.601 kb on - strand, within SO0067 at 78.601 kb on - strand, within SO0067 at 78.606 kb on + strand, within SO0067 at 78.614 kb on - strand, within SO0067 at 78.614 kb on - strand, within SO0067 at 78.753 kb on + strand, within SO0067 at 78.768 kb on - strand, within SO0067 at 78.841 kb on + strand, within SO0067 at 78.841 kb on + strand, within SO0067 at 78.849 kb on - strand, within SO0067 at 78.876 kb on - strand, within SO0067 at 78.910 kb on + strand, within SO0067 at 78.923 kb on - strand, within SO0067 at 79.016 kb on + strand, within SO0067 at 79.050 kb on - strand, within SO0067 at 79.064 kb on - strand, within SO0067 at 79.064 kb on - strand, within SO0067 at 79.070 kb on - strand, within SO0067 at 79.181 kb on + strand, within SO0067 at 79.181 kb on + strand, within SO0067 at 79.326 kb on + strand, within SO0067 at 79.378 kb on + strand, within SO0067 at 79.381 kb on - strand, within SO0067 at 79.381 kb on - strand, within SO0067 at 79.419 kb on - strand, within SO0067 at 79.460 kb on + strand, within SO0067 at 79.496 kb on + strand, within SO0067 at 79.556 kb on - strand, within SO0067 at 79.657 kb on - strand, within SO0067 at 79.755 kb on + strand, within SO0067 at 79.755 kb on + strand, within SO0067 at 79.827 kb on - strand, within SO0067 at 79.827 kb on - strand, within SO0067 at 79.840 kb on + strand, within SO0067 at 79.890 kb on + strand, within SO0067 at 79.906 kb on - strand, within SO0067 at 79.933 kb on + strand, within SO0067 at 79.967 kb on + strand, within SO0067 at 80.003 kb on + strand, within SO0067 at 80.071 kb on - strand, within SO0067 at 80.074 kb on - strand, within SO0067 at 80.164 kb on - strand at 80.214 kb on + strand at 80.227 kb on - strand at 80.243 kb on - strand at 80.244 kb on - strand at 80.314 kb on + strand at 80.341 kb on - strand at 80.348 kb on - strand at 80.348 kb on - strand at 80.348 kb on - strand at 80.348 kb on - strand at 80.356 kb on - strand at 80.362 kb on + strand at 80.369 kb on - strand at 80.560 kb on - strand, within SO0068 at 80.618 kb on + strand at 80.624 kb on - strand at 80.626 kb on - strand at 80.631 kb on - strand at 80.643 kb on + strand at 80.657 kb on + strand at 80.724 kb on + strand at 80.724 kb on + strand at 80.724 kb on + strand at 80.732 kb on - strand at 80.775 kb on + strand at 80.781 kb on + strand, within SO0069 at 80.783 kb on - strand, within SO0069 at 80.789 kb on - strand, within SO0069 at 80.832 kb on - strand, within SO0069 at 80.838 kb on + strand, within SO0069 at 80.846 kb on - strand, within SO0069 at 80.846 kb on - strand, within SO0069 at 80.880 kb on - strand, within SO0069 at 80.880 kb on - strand, within SO0069 at 80.943 kb on - strand, within SO0069 at 81.021 kb on - strand, within SO0069 at 81.021 kb on - strand, within SO0069 at 81.061 kb on + strand, within SO0069 at 81.062 kb on + strand, within SO0069 at 81.069 kb on + strand, within SO0069 at 81.069 kb on + strand, within SO0069 at 81.069 kb on + strand, within SO0069 at 81.077 kb on - strand, within SO0069 at 81.077 kb on - strand, within SO0069 at 81.170 kb on + strand, within SO0069 at 81.196 kb on - strand, within SO0069 at 81.204 kb on - strand, within SO0069 at 81.220 kb on - strand, within SO0069 at 81.237 kb on + strand, within SO0069 at 81.249 kb on + strand, within SO0069 at 81.257 kb on - strand, within SO0069 at 81.257 kb on - strand, within SO0069 at 81.257 kb on - strand, within SO0069 at 81.267 kb on - strand, within SO0069 at 81.313 kb on + strand, within SO0069 at 81.321 kb on - strand, within SO0069
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 77,092 - SO0066 0.83 -1.2 77,121 + SO0066 0.84 -0.2 77,121 + SO0066 0.84 -0.1 77,129 - SO0066 0.84 -0.5 77,129 - SO0066 0.84 +0.1 77,242 - SO0066 0.86 -0.5 77,301 + SO0066 0.87 +0.5 77,301 + SO0066 0.87 +0.2 77,301 + SO0066 0.87 -0.4 77,304 - SO0066 0.87 -0.3 77,309 - SO0066 0.87 +0.1 77,309 - SO0066 0.87 +0.4 77,309 - SO0066 0.87 -0.1 77,309 - SO0066 0.87 -0.7 77,309 - SO0066 0.87 -0.9 77,310 - SO0066 0.87 +0.2 77,364 + SO0066 0.88 +0.9 77,424 + SO0066 0.89 +0.0 77,424 + SO0066 0.89 -0.0 77,432 - SO0066 0.89 -0.7 77,549 + +0.2 77,549 + -0.9 77,549 + +0.4 77,557 - +0.8 77,592 + -0.1 77,592 + -0.2 77,600 - -0.2 77,619 - +0.0 77,630 + -0.2 77,630 + -0.1 77,630 + +0.7 77,630 + +0.7 77,630 + +0.0 77,651 + -1.1 77,699 + -0.5 77,699 + +0.7 77,820 - +0.0 77,987 + +0.2 77,987 + +0.1 78,000 + +0.2 78,000 + -0.5 78,106 + -0.0 78,106 + -0.2 78,106 + +0.6 78,106 + -0.8 78,106 + -1.1 78,113 + +0.9 78,113 + +0.0 78,114 - -0.0 78,114 - +0.4 78,114 - +0.1 78,121 - +0.2 78,121 - -0.3 78,159 - +0.2 78,169 - -0.3 78,195 + +0.3 78,195 + +0.4 78,195 + -1.1 78,203 - +0.1 78,203 - +0.5 78,203 - -1.1 78,223 - +0.3 78,301 + SO0067 0.11 +0.1 78,307 + SO0067 0.11 -0.7 78,322 + SO0067 0.12 +0.1 78,429 + SO0067 0.16 -0.1 78,432 - SO0067 0.16 -0.1 78,442 - SO0067 0.17 +0.3 78,452 - SO0067 0.17 +0.1 78,497 + SO0067 0.19 -0.6 78,505 - SO0067 0.20 +0.1 78,509 + SO0067 0.20 +0.1 78,515 - SO0067 0.20 -0.3 78,515 - SO0067 0.20 +0.0 78,601 - SO0067 0.24 -0.5 78,601 - SO0067 0.24 -1.5 78,606 + SO0067 0.24 -0.5 78,614 - SO0067 0.24 +0.0 78,614 - SO0067 0.24 -0.4 78,753 + SO0067 0.30 -0.4 78,768 - SO0067 0.31 -0.3 78,841 + SO0067 0.34 +0.1 78,841 + SO0067 0.34 -0.1 78,849 - SO0067 0.35 +0.3 78,876 - SO0067 0.36 -2.2 78,910 + SO0067 0.37 +0.2 78,923 - SO0067 0.38 -1.4 79,016 + SO0067 0.42 +0.2 79,050 - SO0067 0.43 -0.3 79,064 - SO0067 0.44 +0.2 79,064 - SO0067 0.44 +0.1 79,070 - SO0067 0.44 -0.4 79,181 + SO0067 0.49 +0.3 79,181 + SO0067 0.49 +0.2 79,326 + SO0067 0.56 +0.3 79,378 + SO0067 0.58 +0.6 79,381 - SO0067 0.58 -0.2 79,381 - SO0067 0.58 -0.8 79,419 - SO0067 0.60 +0.5 79,460 + SO0067 0.61 -0.7 79,496 + SO0067 0.63 -0.1 79,556 - SO0067 0.66 +0.2 79,657 - SO0067 0.70 -0.5 79,755 + SO0067 0.74 +1.3 79,755 + SO0067 0.74 -1.5 79,827 - SO0067 0.78 +0.1 79,827 - SO0067 0.78 +0.3 79,840 + SO0067 0.78 -0.2 79,890 + SO0067 0.80 -0.6 79,906 - SO0067 0.81 +0.1 79,933 + SO0067 0.82 +0.5 79,967 + SO0067 0.84 -0.8 80,003 + SO0067 0.85 -0.6 80,071 - SO0067 0.88 -0.5 80,074 - SO0067 0.88 -0.3 80,164 - +0.2 80,214 + +0.2 80,227 - -0.0 80,243 - +0.8 80,244 - -0.6 80,314 + -0.2 80,341 - -0.2 80,348 - +0.4 80,348 - -0.6 80,348 - -0.0 80,348 - -0.0 80,356 - +0.4 80,362 + +0.8 80,369 - -0.3 80,560 - SO0068 0.80 +0.3 80,618 + -1.1 80,624 - +0.4 80,626 - -0.1 80,631 - +0.1 80,643 + +0.0 80,657 + +1.5 80,724 + -0.3 80,724 + -0.4 80,724 + -0.8 80,732 - +0.8 80,775 + +0.4 80,781 + SO0069 0.10 -0.0 80,783 - SO0069 0.10 +0.2 80,789 - SO0069 0.11 +0.0 80,832 - SO0069 0.14 +0.2 80,838 + SO0069 0.15 -0.1 80,846 - SO0069 0.16 +0.0 80,846 - SO0069 0.16 -0.3 80,880 - SO0069 0.19 -0.0 80,880 - SO0069 0.19 -1.6 80,943 - SO0069 0.24 -0.1 81,021 - SO0069 0.31 -0.3 81,021 - SO0069 0.31 +0.3 81,061 + SO0069 0.35 +0.6 81,062 + SO0069 0.35 +0.4 81,069 + SO0069 0.35 +0.3 81,069 + SO0069 0.35 +0.1 81,069 + SO0069 0.35 +0.4 81,077 - SO0069 0.36 -0.1 81,077 - SO0069 0.36 -0.4 81,170 + SO0069 0.44 +0.5 81,196 - SO0069 0.46 +0.1 81,204 - SO0069 0.47 -0.6 81,220 - SO0069 0.49 +0.1 81,237 + SO0069 0.50 -0.8 81,249 + SO0069 0.51 -0.2 81,257 - SO0069 0.52 -0.3 81,257 - SO0069 0.52 +0.3 81,257 - SO0069 0.52 +1.3 81,267 - SO0069 0.53 +0.4 81,313 + SO0069 0.57 -0.1 81,321 - SO0069 0.57 +0.3
Or see this region's nucleotide sequence