Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09650 and PGA1_c09660 are separated by 286 nucleotides PGA1_c09660 and PGA1_c09670 overlap by 13 nucleotides PGA1_c09670 and PGA1_c09680 are separated by 1 nucleotides
PGA1_c09650: PGA1_c09650 - UDP-N-acetylenolpyruvoylglucosamine reductase MurB, at 989,033 to 989,956
_c09650
PGA1_c09660: PGA1_c09660 - D-alanine--D-alanine ligase Ddl, at 990,243 to 991,163
_c09660
PGA1_c09670: PGA1_c09670 - putative cell division protein FtsQ, at 991,151 to 992,044
_c09670
PGA1_c09680: PGA1_c09680 - celldivision protein FtsA, at 992,046 to 993,380
_c09680
Position (kb)
990
991
992 Strain fitness (log2 ratio)
-2
-1
0
1 at 989.932 kb on + strand at 989.992 kb on + strand at 990.088 kb on - strand at 990.088 kb on - strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.110 kb on + strand at 990.117 kb on + strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.127 kb on + strand at 990.162 kb on + strand at 992.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 989,932 + -0.3 989,992 + -1.4 990,088 - +0.2 990,088 - -1.1 990,110 + -1.3 990,110 + -1.4 990,110 + -0.7 990,110 + -0.1 990,110 + -2.4 990,110 + -1.1 990,110 + -1.4 990,110 + -1.7 990,110 + -0.7 990,110 + -1.3 990,117 + -0.3 990,118 - +0.9 990,118 - +0.9 990,118 - -1.9 990,118 - -2.6 990,118 - -1.8 990,118 - +0.3 990,118 - -1.4 990,118 - +0.4 990,127 + +0.2 990,162 + -1.1 992,023 + -0.1
Or see this region's nucleotide sequence