Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07410 and PGA1_c07420 are separated by 150 nucleotides PGA1_c07420 and PGA1_c07430 are separated by 134 nucleotides PGA1_c07430 and PGA1_c07440 are separated by 18 nucleotides
PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478
_c07410
PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879
_c07420
PGA1_c07430: PGA1_c07430 - putative transcriptional regulator, IclR family, at 767,014 to 767,805
_c07430
PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885
_c07440
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.630 kb on + strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.705 kb on + strand, within PGA1_c07410 at 764.739 kb on - strand, within PGA1_c07410 at 764.840 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.878 kb on + strand, within PGA1_c07410 at 764.893 kb on + strand, within PGA1_c07410 at 764.922 kb on + strand, within PGA1_c07410 at 764.969 kb on + strand, within PGA1_c07410 at 764.977 kb on - strand, within PGA1_c07410 at 764.981 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 765.000 kb on - strand, within PGA1_c07410 at 765.002 kb on + strand, within PGA1_c07410 at 765.005 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.020 kb on - strand, within PGA1_c07410 at 765.037 kb on + strand, within PGA1_c07410 at 765.112 kb on + strand, within PGA1_c07410 at 765.120 kb on - strand, within PGA1_c07410 at 765.123 kb on + strand, within PGA1_c07410 at 765.131 kb on - strand, within PGA1_c07410 at 765.147 kb on + strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.160 kb on - strand, within PGA1_c07410 at 765.162 kb on + strand, within PGA1_c07410 at 765.182 kb on + strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.225 kb on - strand, within PGA1_c07410 at 765.261 kb on + strand, within PGA1_c07410 at 765.283 kb on + strand, within PGA1_c07410 at 765.286 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.353 kb on + strand, within PGA1_c07410 at 765.390 kb on - strand at 765.462 kb on + strand at 765.472 kb on - strand at 765.478 kb on + strand at 765.530 kb on - strand at 765.591 kb on - strand at 765.591 kb on - strand at 765.630 kb on + strand at 765.638 kb on - strand at 765.638 kb on - strand at 765.670 kb on - strand at 765.673 kb on + strand at 765.673 kb on + strand at 765.681 kb on - strand at 765.681 kb on - strand at 765.701 kb on - strand at 765.711 kb on - strand at 765.718 kb on - strand at 765.771 kb on - strand, within PGA1_c07420 at 765.804 kb on - strand, within PGA1_c07420 at 765.838 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.854 kb on + strand, within PGA1_c07420 at 765.873 kb on - strand, within PGA1_c07420 at 765.922 kb on - strand, within PGA1_c07420 at 765.936 kb on + strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 766.046 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.124 kb on + strand, within PGA1_c07420 at 766.151 kb on - strand, within PGA1_c07420 at 766.157 kb on - strand, within PGA1_c07420 at 766.194 kb on - strand, within PGA1_c07420 at 766.222 kb on + strand, within PGA1_c07420 at 766.250 kb on - strand, within PGA1_c07420 at 766.255 kb on - strand, within PGA1_c07420 at 766.265 kb on + strand, within PGA1_c07420 at 766.314 kb on + strand, within PGA1_c07420 at 766.374 kb on - strand, within PGA1_c07420 at 766.387 kb on + strand, within PGA1_c07420 at 766.405 kb on - strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.423 kb on + strand, within PGA1_c07420 at 766.435 kb on + strand, within PGA1_c07420 at 766.443 kb on - strand, within PGA1_c07420 at 766.459 kb on + strand, within PGA1_c07420 at 766.466 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.474 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.515 kb on + strand, within PGA1_c07420 at 766.520 kb on + strand, within PGA1_c07420 at 766.548 kb on + strand, within PGA1_c07420 at 766.595 kb on - strand, within PGA1_c07420 at 766.667 kb on + strand, within PGA1_c07420 at 766.690 kb on + strand, within PGA1_c07420 at 766.762 kb on + strand at 766.767 kb on + strand at 766.767 kb on + strand at 766.768 kb on - strand at 766.816 kb on + strand at 766.826 kb on + strand at 766.826 kb on + strand at 766.831 kb on + strand at 766.831 kb on + strand at 766.834 kb on - strand at 766.834 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.983 kb on - strand at 767.000 kb on + strand at 767.011 kb on + strand at 767.140 kb on - strand, within PGA1_c07430 at 767.162 kb on + strand, within PGA1_c07430 at 767.292 kb on - strand, within PGA1_c07430 at 767.315 kb on + strand, within PGA1_c07430 at 767.357 kb on - strand, within PGA1_c07430 at 767.412 kb on + strand, within PGA1_c07430 at 767.432 kb on + strand, within PGA1_c07430 at 767.482 kb on + strand, within PGA1_c07430 at 767.533 kb on + strand, within PGA1_c07430 at 767.540 kb on + strand, within PGA1_c07430 at 767.541 kb on - strand, within PGA1_c07430 at 767.559 kb on - strand, within PGA1_c07430 at 767.607 kb on - strand, within PGA1_c07430 at 767.657 kb on - strand, within PGA1_c07430 at 767.756 kb on + strand at 767.779 kb on + strand at 767.814 kb on - strand at 767.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 764,630 + PGA1_c07410 0.10 -2.1 764,632 - PGA1_c07410 0.11 +0.2 764,632 - PGA1_c07410 0.11 +1.2 764,705 + PGA1_c07410 0.18 -0.1 764,739 - PGA1_c07410 0.22 -0.6 764,840 + PGA1_c07410 0.33 +1.2 764,853 + PGA1_c07410 0.34 -0.0 764,853 + PGA1_c07410 0.34 -2.1 764,853 + PGA1_c07410 0.34 +0.4 764,861 - PGA1_c07410 0.35 -1.9 764,861 - PGA1_c07410 0.35 -0.7 764,863 + PGA1_c07410 0.35 -1.7 764,863 + PGA1_c07410 0.35 -0.2 764,878 + PGA1_c07410 0.37 -0.4 764,893 + PGA1_c07410 0.38 +0.7 764,922 + PGA1_c07410 0.41 -0.2 764,969 + PGA1_c07410 0.46 +0.6 764,977 - PGA1_c07410 0.47 -1.3 764,981 + PGA1_c07410 0.47 -0.6 764,986 + PGA1_c07410 0.48 +0.2 764,986 + PGA1_c07410 0.48 -0.5 764,986 + PGA1_c07410 0.48 -0.4 764,991 + PGA1_c07410 0.49 -0.1 764,991 + PGA1_c07410 0.49 -0.1 764,994 - PGA1_c07410 0.49 -0.6 764,994 - PGA1_c07410 0.49 -0.7 764,994 - PGA1_c07410 0.49 +0.2 764,994 - PGA1_c07410 0.49 -1.5 764,994 - PGA1_c07410 0.49 +1.1 764,994 - PGA1_c07410 0.49 -0.1 764,999 - PGA1_c07410 0.49 -0.3 764,999 - PGA1_c07410 0.49 +0.7 765,000 - PGA1_c07410 0.49 +0.2 765,002 + PGA1_c07410 0.50 +1.4 765,005 - PGA1_c07410 0.50 -2.2 765,010 - PGA1_c07410 0.51 -0.7 765,010 - PGA1_c07410 0.51 +1.1 765,020 - PGA1_c07410 0.52 +0.8 765,037 + PGA1_c07410 0.53 -0.1 765,112 + PGA1_c07410 0.61 -0.8 765,120 - PGA1_c07410 0.62 -2.8 765,123 + PGA1_c07410 0.62 -0.4 765,131 - PGA1_c07410 0.63 +0.2 765,147 + PGA1_c07410 0.65 +0.1 765,155 - PGA1_c07410 0.66 -0.9 765,155 - PGA1_c07410 0.66 -0.2 765,160 - PGA1_c07410 0.66 +0.4 765,162 + PGA1_c07410 0.67 -1.5 765,182 + PGA1_c07410 0.69 -1.0 765,211 - PGA1_c07410 0.72 -1.7 765,211 - PGA1_c07410 0.72 -0.9 765,225 - PGA1_c07410 0.73 +0.4 765,261 + PGA1_c07410 0.77 -1.1 765,283 + PGA1_c07410 0.79 -0.4 765,286 - PGA1_c07410 0.80 -2.1 765,291 - PGA1_c07410 0.80 +0.5 765,291 - PGA1_c07410 0.80 -0.3 765,307 + PGA1_c07410 0.82 -0.3 765,307 + PGA1_c07410 0.82 +0.0 765,307 + PGA1_c07410 0.82 -0.1 765,315 - PGA1_c07410 0.83 +1.4 765,315 - PGA1_c07410 0.83 -3.2 765,315 - PGA1_c07410 0.83 -0.4 765,353 + PGA1_c07410 0.87 -0.3 765,390 - +0.5 765,462 + -3.7 765,472 - -0.3 765,478 + -0.3 765,530 - -0.2 765,591 - +0.2 765,591 - +0.7 765,630 + -1.3 765,638 - -0.2 765,638 - -0.8 765,670 - -0.1 765,673 + -0.1 765,673 + +0.2 765,681 - +1.3 765,681 - +0.8 765,701 - -2.2 765,711 - -0.6 765,718 - +0.3 765,771 - PGA1_c07420 0.11 -2.5 765,804 - PGA1_c07420 0.14 -1.8 765,838 + PGA1_c07420 0.17 -0.4 765,843 + PGA1_c07420 0.17 +0.0 765,843 + PGA1_c07420 0.17 -0.7 765,854 + PGA1_c07420 0.18 -0.3 765,873 - PGA1_c07420 0.20 -2.8 765,922 - PGA1_c07420 0.23 -0.3 765,936 + PGA1_c07420 0.25 +0.5 765,944 - PGA1_c07420 0.25 +0.5 765,944 - PGA1_c07420 0.25 -0.9 766,046 + PGA1_c07420 0.33 -0.7 766,051 + PGA1_c07420 0.34 -0.1 766,051 + PGA1_c07420 0.34 -1.1 766,124 + PGA1_c07420 0.40 -0.1 766,151 - PGA1_c07420 0.42 -1.6 766,157 - PGA1_c07420 0.42 -0.3 766,194 - PGA1_c07420 0.45 +0.5 766,222 + PGA1_c07420 0.47 -0.6 766,250 - PGA1_c07420 0.50 -0.1 766,255 - PGA1_c07420 0.50 -0.2 766,265 + PGA1_c07420 0.51 -0.1 766,314 + PGA1_c07420 0.55 +0.9 766,374 - PGA1_c07420 0.60 -0.8 766,387 + PGA1_c07420 0.61 +0.9 766,405 - PGA1_c07420 0.62 -1.9 766,408 + PGA1_c07420 0.62 +0.1 766,408 + PGA1_c07420 0.62 -0.1 766,408 + PGA1_c07420 0.62 -1.4 766,416 - PGA1_c07420 0.63 -0.6 766,416 - PGA1_c07420 0.63 +0.8 766,416 - PGA1_c07420 0.63 +0.5 766,423 + PGA1_c07420 0.63 +0.3 766,435 + PGA1_c07420 0.64 +1.2 766,443 - PGA1_c07420 0.65 +0.9 766,459 + PGA1_c07420 0.66 -0.4 766,466 + PGA1_c07420 0.67 -0.6 766,467 + PGA1_c07420 0.67 -0.1 766,467 + PGA1_c07420 0.67 +0.9 766,467 + PGA1_c07420 0.67 -1.9 766,467 + PGA1_c07420 0.67 -1.0 766,467 + PGA1_c07420 0.67 -0.1 766,467 + PGA1_c07420 0.67 -1.0 766,467 + PGA1_c07420 0.67 +0.3 766,467 + PGA1_c07420 0.67 -0.5 766,467 + PGA1_c07420 0.67 +0.3 766,474 - PGA1_c07420 0.68 -0.1 766,475 - PGA1_c07420 0.68 +1.9 766,475 - PGA1_c07420 0.68 -0.1 766,475 - PGA1_c07420 0.68 -0.8 766,475 - PGA1_c07420 0.68 +0.8 766,475 - PGA1_c07420 0.68 +2.7 766,475 - PGA1_c07420 0.68 +0.1 766,515 + PGA1_c07420 0.71 +0.9 766,520 + PGA1_c07420 0.71 +1.4 766,548 + PGA1_c07420 0.73 -0.8 766,595 - PGA1_c07420 0.77 +0.1 766,667 + PGA1_c07420 0.83 +0.9 766,690 + PGA1_c07420 0.85 +1.3 766,762 + +3.3 766,767 + +0.3 766,767 + -0.6 766,768 - +1.0 766,816 + -0.9 766,826 + +0.1 766,826 + -0.5 766,831 + -0.6 766,831 + +0.3 766,834 - -0.1 766,834 - -0.9 766,839 - +0.1 766,839 - -0.2 766,839 - -0.4 766,839 - -0.3 766,839 - -0.4 766,839 - +0.2 766,983 - -1.9 767,000 + -0.6 767,011 + +0.1 767,140 - PGA1_c07430 0.16 -0.8 767,162 + PGA1_c07430 0.19 -0.5 767,292 - PGA1_c07430 0.35 -1.9 767,315 + PGA1_c07430 0.38 -0.4 767,357 - PGA1_c07430 0.43 -1.1 767,412 + PGA1_c07430 0.50 +0.5 767,432 + PGA1_c07430 0.53 +0.5 767,482 + PGA1_c07430 0.59 -0.2 767,533 + PGA1_c07430 0.66 +0.3 767,540 + PGA1_c07430 0.66 +0.7 767,541 - PGA1_c07430 0.67 -0.6 767,559 - PGA1_c07430 0.69 -0.3 767,607 - PGA1_c07430 0.75 -1.1 767,657 - PGA1_c07430 0.81 -0.1 767,756 + -0.1 767,779 + -0.7 767,814 - -0.6 767,841 + +0.9
Or see this region's nucleotide sequence