Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33620

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,521,104	-				+0.5
3,521,132	+		PGA1_c33610	0.11	+1.0
3,521,167	+		PGA1_c33610	0.16	-0.6
3,521,218	-		PGA1_c33610	0.23	-0.9
3,521,278	+		PGA1_c33610	0.31	-0.5
3,521,308	-		PGA1_c33610	0.36	+0.7
3,521,313	-		PGA1_c33610	0.36	-2.6
3,521,392	-		PGA1_c33610	0.48	-1.0
3,521,430	+		PGA1_c33610	0.53	-0.3
3,521,455	-		PGA1_c33610	0.57	+1.1
3,521,487	+		PGA1_c33610	0.61	+1.9
3,521,494	-		PGA1_c33610	0.62	+0.0
3,521,501	-		PGA1_c33610	0.63	+0.7
3,521,539	-		PGA1_c33610	0.69	-1.3
3,521,544	-		PGA1_c33610	0.69	-0.7
3,521,566	+		PGA1_c33610	0.73	-0.2
3,521,602	+		PGA1_c33610	0.78	-1.4
3,521,613	+		PGA1_c33610	0.79	+0.6
3,521,638	-		PGA1_c33610	0.83	-0.1
3,521,641	+		PGA1_c33610	0.83	+1.3
3,521,660	+		PGA1_c33610	0.86	-0.3
3,521,660	+		PGA1_c33610	0.86	-0.2
3,521,668	-		PGA1_c33610	0.87	+0.6
3,521,674	+		PGA1_c33610	0.88	+0.3
3,521,738	+				+0.5
3,521,738	+				+1.7
3,521,738	+				-0.2
3,521,738	+				+0.9
3,521,738	+				-2.1
3,521,738	+				-0.3
3,521,746	-				+1.6
3,521,752	+				-0.8
3,521,752	+				+0.0
3,521,753	+				+0.7
3,521,760	-				-0.3
3,521,761	-				+0.3
3,521,770	-				+1.5
3,521,831	-				-0.1
3,521,876	+				+1.7
3,521,876	+				+0.0
3,521,876	+				+0.1
3,521,881	+				-0.0
3,521,884	-				+1.3
3,521,884	-				-0.0
3,521,886	+				-0.3
3,521,889	-				-0.2
3,521,900	+				+1.0
3,521,901	+				-2.8
3,521,908	-				-1.0
3,521,908	-				-0.1
3,521,909	-				+1.3
3,521,955	-				+0.6
3,521,992	-				-0.1
3,522,001	+				+0.3
3,522,006	+				+1.2
3,522,053	-				-0.2
3,522,142	-		PGA1_c33620	0.15	+0.9
3,522,157	+		PGA1_c33620	0.16	+0.1
3,522,188	+		PGA1_c33620	0.18	+0.4
3,522,196	-		PGA1_c33620	0.18	-0.0
3,522,233	-		PGA1_c33620	0.21	+1.7
3,522,233	-		PGA1_c33620	0.21	+0.9
3,522,233	-		PGA1_c33620	0.21	+0.9
3,522,311	+		PGA1_c33620	0.26	+1.4
3,522,390	+		PGA1_c33620	0.30	-0.0
3,522,392	+		PGA1_c33620	0.31	+0.6
3,522,398	-		PGA1_c33620	0.31	+0.0
3,522,398	-		PGA1_c33620	0.31	-0.9
3,522,399	+		PGA1_c33620	0.31	+0.2
3,522,407	-		PGA1_c33620	0.32	-0.7
3,522,438	+		PGA1_c33620	0.33	+1.5
3,522,438	+		PGA1_c33620	0.33	+1.0
3,522,446	-		PGA1_c33620	0.34	-0.8
3,522,451	-		PGA1_c33620	0.34	-0.3
3,522,461	+		PGA1_c33620	0.35	-1.8
3,522,474	-		PGA1_c33620	0.36	+0.7
3,522,502	-		PGA1_c33620	0.37	+0.3
3,522,537	+		PGA1_c33620	0.40	+0.2
3,522,557	-		PGA1_c33620	0.41	+1.9
3,522,608	+		PGA1_c33620	0.44	-1.3
3,522,782	+		PGA1_c33620	0.55	+0.5
3,522,810	+		PGA1_c33620	0.56	+1.0
3,522,810	+		PGA1_c33620	0.56	-2.4
3,522,810	+		PGA1_c33620	0.56	+0.6
3,522,810	+		PGA1_c33620	0.56	-1.0
3,522,818	-		PGA1_c33620	0.57	+1.2
3,522,821	+		PGA1_c33620	0.57	+0.7
3,522,831	+		PGA1_c33620	0.58	+1.8
3,522,831	+		PGA1_c33620	0.58	+1.0
3,522,831	+		PGA1_c33620	0.58	-0.1
3,522,831	+		PGA1_c33620	0.58	-0.2
3,522,831	+		PGA1_c33620	0.58	+0.8
3,522,831	+		PGA1_c33620	0.58	+1.3
3,522,831	+		PGA1_c33620	0.58	+0.9
3,522,831	+		PGA1_c33620	0.58	+0.3
3,522,831	+		PGA1_c33620	0.58	-1.4
3,522,831	+		PGA1_c33620	0.58	-0.3
3,522,839	-		PGA1_c33620	0.58	+0.0
3,522,839	-		PGA1_c33620	0.58	+1.0
3,522,839	-		PGA1_c33620	0.58	-0.2
3,522,839	-		PGA1_c33620	0.58	+0.3
3,522,839	-		PGA1_c33620	0.58	+0.1
3,522,839	-		PGA1_c33620	0.58	+2.0
3,522,839	-		PGA1_c33620	0.58	+1.1
3,522,839	-		PGA1_c33620	0.58	+2.2
3,522,839	-		PGA1_c33620	0.58	+2.3
3,522,839	-		PGA1_c33620	0.58	+1.6
3,522,839	-		PGA1_c33620	0.58	-0.9
3,522,839	-		PGA1_c33620	0.58	-1.9
3,522,839	-		PGA1_c33620	0.58	-1.0
3,522,839	-		PGA1_c33620	0.58	+0.9
3,522,915	-		PGA1_c33620	0.63	-2.5
3,522,956	+		PGA1_c33620	0.65	-0.7
3,523,001	+		PGA1_c33620	0.68	-2.3
3,523,001	+		PGA1_c33620	0.68	-1.1
3,523,001	+		PGA1_c33620	0.68	+0.4
3,523,009	-		PGA1_c33620	0.69	-0.1
3,523,011	+		PGA1_c33620	0.69	-0.0
3,523,038	-		PGA1_c33620	0.71	+2.1
3,523,150	-		PGA1_c33620	0.77	-0.7
3,523,245	+		PGA1_c33620	0.83	+0.1
3,523,257	-		PGA1_c33620	0.84	+0.7
3,523,257	-		PGA1_c33620	0.84	+0.6
3,523,257	-		PGA1_c33620	0.84	-0.6
3,523,274	-		PGA1_c33620	0.85	+0.9
3,523,284	-		PGA1_c33620	0.86	-1.0
3,523,372	-				-0.2
3,523,383	+				-0.2
3,523,383	+				+0.3
3,523,391	-				-0.4
3,523,401	+				-0.7
3,523,420	+				-1.3
3,523,428	-				-0.3
3,523,460	-				+0.6
3,523,624	-		PGA1_c33630	0.12	-1.1
3,523,646	+		PGA1_c33630	0.14	+0.2
3,523,646	+		PGA1_c33630	0.14	+0.9
3,523,646	+		PGA1_c33630	0.14	-0.1
3,523,646	+		PGA1_c33630	0.14	-0.2
3,523,646	+		PGA1_c33630	0.14	+0.7
3,523,648	+		PGA1_c33630	0.14	-1.4
3,523,649	-		PGA1_c33630	0.14	-0.0
3,523,654	-		PGA1_c33630	0.15	-0.5
3,523,655	-		PGA1_c33630	0.15	+0.9
3,523,656	-		PGA1_c33630	0.15	+1.1
3,523,689	+		PGA1_c33630	0.18	+1.4
3,523,689	+		PGA1_c33630	0.18	-1.2
3,523,697	-		PGA1_c33630	0.19	+0.1
3,523,697	-		PGA1_c33630	0.19	-0.3
3,523,697	-		PGA1_c33630	0.19	+0.5
3,523,701	+		PGA1_c33630	0.19	-1.2
3,523,709	-		PGA1_c33630	0.20	-0.0
3,523,722	+		PGA1_c33630	0.21	-1.4
3,523,728	+		PGA1_c33630	0.22	+1.1
3,523,759	+		PGA1_c33630	0.25	-0.1
3,523,759	+		PGA1_c33630	0.25	-2.0
3,523,761	-		PGA1_c33630	0.25	-0.3
3,523,767	+		PGA1_c33630	0.26	-1.5
3,523,792	+		PGA1_c33630	0.28	+0.5
3,523,863	-		PGA1_c33630	0.35	+0.4
3,523,917	+		PGA1_c33630	0.40	-2.6
3,523,938	+		PGA1_c33630	0.42	+0.8
3,524,091	-		PGA1_c33630	0.57	-0.7
3,524,120	+		PGA1_c33630	0.60	+0.3
3,524,120	+		PGA1_c33630	0.60	-1.7
3,524,124	+		PGA1_c33630	0.60	+0.8
3,524,128	-		PGA1_c33630	0.60	-0.0
3,524,168	+		PGA1_c33630	0.64	-0.4
3,524,176	+		PGA1_c33630	0.65	+1.0
3,524,176	-		PGA1_c33630	0.65	+1.7
3,524,186	+		PGA1_c33630	0.66	-0.0
3,524,186	+		PGA1_c33630	0.66	-2.3
3,524,216	-		PGA1_c33630	0.69	-1.7
3,524,239	-		PGA1_c33630	0.71	+0.3
3,524,242	+		PGA1_c33630	0.71	-0.2
3,524,297	-		PGA1_c33630	0.77	-2.9
3,524,322	-		PGA1_c33630	0.79	+0.6
3,524,327	-		PGA1_c33630	0.80	-0.7
3,524,327	-		PGA1_c33630	0.80	-0.9
3,524,327	-		PGA1_c33630	0.80	+0.0
3,524,327	-		PGA1_c33630	0.80	+1.6
3,524,339	-		PGA1_c33630	0.81	-0.3
3,524,365	-		PGA1_c33630	0.83	-0.4
3,524,374	+		PGA1_c33630	0.84	-1.1
3,524,392	-		PGA1_c33630	0.86	-1.2
3,524,402	+		PGA1_c33630	0.87	-0.5
3,524,402	+		PGA1_c33630	0.87	-0.3
3,524,455	-				+0.5
3,524,470	+				-1.5
3,524,478	-				-0.4
3,524,478	-				-0.8
3,524,488	-				+0.9