Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28740

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,011,319	+				-0.4
3,011,319	+				+0.9
3,011,327	-				-1.1
3,011,359	+				+1.9
3,011,367	-				-0.1
3,011,388	-				-2.1
3,011,483	+				-0.9
3,011,519	+				-0.6
3,011,555	+		PGA1_c28730	0.13	-1.1
3,011,563	+		PGA1_c28730	0.14	+1.5
3,011,563	+		PGA1_c28730	0.14	+1.5
3,011,563	+		PGA1_c28730	0.14	+0.9
3,011,563	+		PGA1_c28730	0.14	+0.9
3,011,563	+		PGA1_c28730	0.14	+1.7
3,011,563	+		PGA1_c28730	0.14	-0.1
3,011,571	-		PGA1_c28730	0.15	-0.9
3,011,571	-		PGA1_c28730	0.15	+0.4
3,011,575	+		PGA1_c28730	0.16	-0.1
3,011,583	-		PGA1_c28730	0.17	-1.4
3,011,596	-		PGA1_c28730	0.18	+0.9
3,011,604	-		PGA1_c28730	0.19	-1.9
3,011,606	-		PGA1_c28730	0.20	+0.9
3,011,631	-		PGA1_c28730	0.23	+1.5
3,011,643	+		PGA1_c28730	0.24	+0.9
3,011,643	+		PGA1_c28730	0.24	+0.9
3,011,650	+		PGA1_c28730	0.25	-0.1
3,011,651	-		PGA1_c28730	0.25	-1.1
3,011,726	-		PGA1_c28730	0.35	-0.3
3,011,734	-		PGA1_c28730	0.36	+0.9
3,011,736	-		PGA1_c28730	0.36	+0.9
3,011,821	+		PGA1_c28730	0.47	+0.9
3,011,858	-		PGA1_c28730	0.52	+1.9
3,011,858	-		PGA1_c28730	0.52	+2.5
3,011,875	+		PGA1_c28730	0.54	+1.7
3,011,883	-		PGA1_c28730	0.55	-1.1
3,011,883	-		PGA1_c28730	0.55	+0.9
3,011,888	+		PGA1_c28730	0.56	+1.5
3,011,888	+		PGA1_c28730	0.56	-0.6
3,011,907	+		PGA1_c28730	0.58	-0.1
3,011,932	-		PGA1_c28730	0.61	+1.9
3,011,975	+		PGA1_c28730	0.67	+0.9
3,012,031	+		PGA1_c28730	0.74	+1.5
3,012,036	+		PGA1_c28730	0.75	-1.6
3,012,041	+		PGA1_c28730	0.75	+0.6
3,012,062	-		PGA1_c28730	0.78	-1.6
3,012,068	+		PGA1_c28730	0.79	-0.1
3,012,069	+		PGA1_c28730	0.79	+0.9
3,012,069	+		PGA1_c28730	0.79	+0.9
3,012,187	+				+0.6
3,012,195	-				-0.8
3,012,230	+				-0.1
3,012,272	+				+1.9
3,012,313	+				-1.1
3,012,321	-				+0.9
3,012,331	-				+0.4
3,012,378	+				+0.4
3,012,431	+		PGA1_c28740	0.14	+1.5
3,012,431	+		PGA1_c28740	0.14	-0.1
3,012,431	+		PGA1_c28740	0.14	+1.4
3,012,431	+		PGA1_c28740	0.14	-0.9
3,012,431	+		PGA1_c28740	0.14	-0.1
3,012,431	+		PGA1_c28740	0.14	+2.9
3,012,431	+		PGA1_c28740	0.14	-0.4
3,012,431	+		PGA1_c28740	0.14	-0.4
3,012,431	+		PGA1_c28740	0.14	-0.1
3,012,431	+		PGA1_c28740	0.14	-0.6
3,012,439	-		PGA1_c28740	0.14	+1.9
3,012,439	-		PGA1_c28740	0.14	+2.4
3,012,439	-		PGA1_c28740	0.14	+0.4
3,012,439	-		PGA1_c28740	0.14	-0.1
3,012,439	-		PGA1_c28740	0.14	+0.5
3,012,439	-		PGA1_c28740	0.14	-0.9
3,012,439	-		PGA1_c28740	0.14	+1.9
3,012,439	-		PGA1_c28740	0.14	+4.1
3,012,439	-		PGA1_c28740	0.14	+2.3
3,012,439	-		PGA1_c28740	0.14	+1.9
3,012,439	-		PGA1_c28740	0.14	+0.2
3,012,439	-		PGA1_c28740	0.14	+1.4
3,012,439	-		PGA1_c28740	0.14	+3.5
3,012,477	+		PGA1_c28740	0.17	-0.1
3,012,478	-		PGA1_c28740	0.17	+2.3
3,012,502	+		PGA1_c28740	0.18	+0.6
3,012,502	+		PGA1_c28740	0.18	+1.9
3,012,502	+		PGA1_c28740	0.18	-0.6
3,012,502	+		PGA1_c28740	0.18	+1.5
3,012,502	+		PGA1_c28740	0.18	+1.5
3,012,505	-		PGA1_c28740	0.19	-0.3
3,012,509	+		PGA1_c28740	0.19	+1.3
3,012,510	-		PGA1_c28740	0.19	+0.5
3,012,518	-		PGA1_c28740	0.19	-1.1
3,012,543	+		PGA1_c28740	0.21	+1.9
3,012,568	+		PGA1_c28740	0.23	+1.9
3,012,612	-		PGA1_c28740	0.26	-0.6
3,012,633	-		PGA1_c28740	0.27	+0.2
3,012,656	-		PGA1_c28740	0.29	-0.1
3,012,848	+		PGA1_c28740	0.42	-1.4
3,012,856	-		PGA1_c28740	0.42	+0.4
3,012,856	-		PGA1_c28740	0.42	+1.7
3,012,856	-		PGA1_c28740	0.42	+0.9
3,012,856	-		PGA1_c28740	0.42	+0.7
3,012,856	-		PGA1_c28740	0.42	+2.5
3,012,856	-		PGA1_c28740	0.42	+1.9
3,012,856	-		PGA1_c28740	0.42	+1.9
3,012,856	-		PGA1_c28740	0.42	+0.9
3,012,856	-		PGA1_c28740	0.42	-1.9
3,012,856	-		PGA1_c28740	0.42	-1.1
3,012,864	+		PGA1_c28740	0.43	-0.6
3,012,864	+		PGA1_c28740	0.43	-0.6
3,012,887	-		PGA1_c28740	0.45	+1.9
3,012,911	-		PGA1_c28740	0.46	+1.9
3,012,912	+		PGA1_c28740	0.46	+1.3
3,012,912	+		PGA1_c28740	0.46	+1.9
3,012,912	+		PGA1_c28740	0.46	+0.5
3,012,912	+		PGA1_c28740	0.46	+3.9
3,012,920	-		PGA1_c28740	0.47	+0.9
3,012,988	-		PGA1_c28740	0.51	-0.5
3,013,026	-		PGA1_c28740	0.54	+1.9
3,013,026	-		PGA1_c28740	0.54	+0.9
3,013,037	+		PGA1_c28740	0.55	+0.9
3,013,058	-		PGA1_c28740	0.56	-0.9
3,013,058	-		PGA1_c28740	0.56	+1.4
3,013,058	-		PGA1_c28740	0.56	+0.1
3,013,147	+		PGA1_c28740	0.62	+0.9
3,013,270	-		PGA1_c28740	0.71	-0.2
3,013,271	-		PGA1_c28740	0.71	-0.6
3,013,273	+		PGA1_c28740	0.71	+0.4
3,013,281	-		PGA1_c28740	0.71	-0.6
3,013,391	+		PGA1_c28740	0.79	+0.7
3,013,391	+		PGA1_c28740	0.79	-0.1
3,013,399	-		PGA1_c28740	0.79	+0.9
3,013,399	-		PGA1_c28740	0.79	-0.6
3,013,399	-		PGA1_c28740	0.79	+0.9
3,013,416	-		PGA1_c28740	0.81	+0.9
3,013,431	+		PGA1_c28740	0.82	+1.7
3,013,439	-		PGA1_c28740	0.82	+0.1
3,013,510	+		PGA1_c28740	0.87	-0.1
3,013,521	+		PGA1_c28740	0.88	+0.9
3,013,566	+				+1.2
3,013,634	-				+2.2
3,013,674	+				+0.4
3,013,675	+				-1.1
3,013,683	-				+0.7
3,013,901	-				+1.9
3,013,906	-				-0.6
3,013,906	-				+0.4
3,013,908	+				+1.9
3,013,908	+				-0.1
3,013,913	+				+0.9
3,013,921	-				+0.7
3,013,921	-				+0.9
3,013,921	-				-0.6
3,013,921	-				-0.6
3,013,935	+				+3.5
3,013,935	+				+2.5
3,013,954	-				+1.9
3,013,966	+				-0.6
3,013,986	-				-0.1
3,013,986	-				+1.9
3,013,995	+				+2.8
3,014,035	+				+0.9
3,014,056	-		PGA1_c28750	0.11	+0.2
3,014,093	+		PGA1_c28750	0.14	+0.4
3,014,101	-		PGA1_c28750	0.14	-0.1
3,014,101	-		PGA1_c28750	0.14	+0.9
3,014,111	-		PGA1_c28750	0.15	-0.4
3,014,113	+		PGA1_c28750	0.15	+0.9
3,014,148	+		PGA1_c28750	0.18	+1.4
3,014,148	+		PGA1_c28750	0.18	+0.3
3,014,148	+		PGA1_c28750	0.18	+0.9
3,014,156	-		PGA1_c28750	0.19	-0.5
3,014,158	+		PGA1_c28750	0.19	+0.9
3,014,166	-		PGA1_c28750	0.19	+0.6
3,014,166	-		PGA1_c28750	0.19	+2.9
3,014,190	-		PGA1_c28750	0.21	+2.5
3,014,236	+		PGA1_c28750	0.25	+1.9
3,014,254	-		PGA1_c28750	0.26	+0.9
3,014,319	+		PGA1_c28750	0.31	+2.5
3,014,319	+		PGA1_c28750	0.31	-0.6
3,014,319	+		PGA1_c28750	0.31	+0.4
3,014,319	+		PGA1_c28750	0.31	+2.5
3,014,319	+		PGA1_c28750	0.31	+1.9
3,014,322	-		PGA1_c28750	0.31	-0.9
3,014,324	+		PGA1_c28750	0.31	-1.2
3,014,327	-		PGA1_c28750	0.32	+2.3
3,014,373	-		PGA1_c28750	0.35	+1.4
3,014,384	+		PGA1_c28750	0.36	+0.9
3,014,425	-		PGA1_c28750	0.39	-1.1
3,014,426	-		PGA1_c28750	0.39	-0.1
3,014,477	+		PGA1_c28750	0.43	-0.6
3,014,485	-		PGA1_c28750	0.43	+1.4
3,014,485	-		PGA1_c28750	0.43	-2.1
3,014,487	+		PGA1_c28750	0.44	-0.1
3,014,512	+		PGA1_c28750	0.46	+0.9
3,014,516	-		PGA1_c28750	0.46	+1.9
3,014,578	-		PGA1_c28750	0.50	+0.9
3,014,579	+		PGA1_c28750	0.51	+0.4
3,014,579	+		PGA1_c28750	0.51	+0.9
3,014,587	-		PGA1_c28750	0.51	+1.5
3,014,587	-		PGA1_c28750	0.51	+1.8
3,014,587	-		PGA1_c28750	0.51	-0.6
3,014,587	-		PGA1_c28750	0.51	-0.1
3,014,590	+		PGA1_c28750	0.51	+0.4
3,014,627	+		PGA1_c28750	0.54	+1.5
3,014,627	+		PGA1_c28750	0.54	-0.6
3,014,627	+		PGA1_c28750	0.54	-1.1