Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23290

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,417,183	+		PGA1_c23280	0.50	+0.8
2,417,186	-		PGA1_c23280	0.50	+0.9
2,417,186	-		PGA1_c23280	0.50	+0.1
2,417,248	+		PGA1_c23280	0.53	-1.1
2,417,256	+		PGA1_c23280	0.54	+0.7
2,417,256	+		PGA1_c23280	0.54	+0.1
2,417,264	-		PGA1_c23280	0.54	-1.8
2,417,284	+		PGA1_c23280	0.55	+0.4
2,417,284	-		PGA1_c23280	0.55	+0.2
2,417,292	-		PGA1_c23280	0.55	-1.3
2,417,330	-		PGA1_c23280	0.57	-1.4
2,417,336	+		PGA1_c23280	0.58	+0.2
2,417,339	-		PGA1_c23280	0.58	-0.1
2,417,340	-		PGA1_c23280	0.58	+0.2
2,417,368	+		PGA1_c23280	0.59	-0.2
2,417,410	+		PGA1_c23280	0.61	-0.5
2,417,410	+		PGA1_c23280	0.61	+0.9
2,417,418	-		PGA1_c23280	0.62	+0.5
2,417,426	-		PGA1_c23280	0.62	+0.7
2,417,477	+		PGA1_c23280	0.65	+1.2
2,417,477	+		PGA1_c23280	0.65	+1.4
2,417,477	+		PGA1_c23280	0.65	+1.4
2,417,477	+		PGA1_c23280	0.65	+0.7
2,417,477	+		PGA1_c23280	0.65	+1.3
2,417,477	+		PGA1_c23280	0.65	-0.2
2,417,477	+		PGA1_c23280	0.65	-0.2
2,417,477	+		PGA1_c23280	0.65	+0.9
2,417,479	-		PGA1_c23280	0.65	+0.0
2,417,485	-		PGA1_c23280	0.65	-0.5
2,417,485	-		PGA1_c23280	0.65	+2.6
2,417,485	-		PGA1_c23280	0.65	+1.1
2,417,485	-		PGA1_c23280	0.65	-1.9
2,417,485	-		PGA1_c23280	0.65	+0.4
2,417,485	-		PGA1_c23280	0.65	-0.6
2,417,485	-		PGA1_c23280	0.65	+0.1
2,417,485	-		PGA1_c23280	0.65	+0.3
2,417,554	+		PGA1_c23280	0.69	-0.1
2,417,562	-		PGA1_c23280	0.69	+1.3
2,417,590	+		PGA1_c23280	0.70	+0.9
2,417,602	+		PGA1_c23280	0.71	+0.2
2,417,602	+		PGA1_c23280	0.71	+1.4
2,417,610	-		PGA1_c23280	0.71	-0.4
2,417,610	-		PGA1_c23280	0.71	+0.9
2,417,696	-		PGA1_c23280	0.76	+0.2
2,417,718	+		PGA1_c23280	0.77	-0.5
2,417,718	+				+0.9
2,417,726	-		PGA1_c23280	0.77	+0.1
2,417,726	-		PGA1_c23280	0.77	+0.8
2,417,726	-		PGA1_c23280	0.77	-0.1
2,417,726	-		PGA1_c23280	0.77	-0.1
2,417,746	-		PGA1_c23280	0.78	-1.2
2,417,765	+		PGA1_c23280	0.79	-0.4
2,417,765	+		PGA1_c23280	0.79	-0.5
2,417,773	-		PGA1_c23280	0.80	-0.6
2,417,816	+		PGA1_c23280	0.82	-0.3
2,417,824	-		PGA1_c23280	0.82	+0.9
2,417,824	-		PGA1_c23280	0.82	-1.9
2,417,824	-		PGA1_c23280	0.82	-0.6
2,417,828	+		PGA1_c23280	0.82	+0.2
2,417,836	-		PGA1_c23280	0.83	-0.6
2,417,836	-		PGA1_c23280	0.83	+0.5
2,417,836	-		PGA1_c23280	0.83	-0.1
2,417,886	+		PGA1_c23280	0.85	+1.3
2,417,892	+		PGA1_c23280	0.86	+1.3
2,417,959	+		PGA1_c23280	0.89	+1.2
2,417,971	+		PGA1_c23280	0.90	-0.8
2,417,982	+				+2.3
2,418,039	-				-0.9
2,418,061	-				+1.1
2,418,218	+				+0.5
2,418,238	+				+1.9
2,418,243	+				+0.4
2,418,263	+				-1.6
2,418,268	-				-0.6
2,418,323	+		PGA1_c23290	0.16	-0.6
2,418,331	-		PGA1_c23290	0.17	+0.7
2,418,331	-		PGA1_c23290	0.17	+0.4
2,418,331	-		PGA1_c23290	0.17	+2.9
2,418,372	-		PGA1_c23290	0.22	+1.9
2,418,395	+		PGA1_c23290	0.24	+0.4
2,418,413	+		PGA1_c23290	0.26	+1.1
2,418,413	+		PGA1_c23290	0.26	-0.1
2,418,420	-		PGA1_c23290	0.27	+0.3
2,418,437	-		PGA1_c23290	0.29	-0.1
2,418,456	+		PGA1_c23290	0.31	-0.9
2,418,571	+		PGA1_c23290	0.44	-0.6
2,418,758	-		PGA1_c23290	0.65	+0.6
2,418,758	-		PGA1_c23290	0.65	-0.1
2,418,758	-		PGA1_c23290	0.65	+0.4
2,418,758	-		PGA1_c23290	0.65	+0.9
2,418,758	-		PGA1_c23290	0.65	+0.0
2,418,758	-		PGA1_c23290	0.65	-0.1
2,418,770	+		PGA1_c23290	0.67	+0.9
2,418,778	-		PGA1_c23290	0.68	+0.4
2,418,802	+		PGA1_c23290	0.70	-1.4
2,418,861	-		PGA1_c23290	0.77	+3.2
2,418,884	+		PGA1_c23290	0.80	+0.7
2,418,884	+		PGA1_c23290	0.80	+2.2
2,418,892	-		PGA1_c23290	0.80	-0.1
2,418,892	-		PGA1_c23290	0.80	+0.7
2,418,892	-		PGA1_c23290	0.80	+0.1
2,418,892	-		PGA1_c23290	0.80	-0.1
2,418,917	+		PGA1_c23290	0.83	+0.3
2,419,037	+				+1.2
2,419,064	+				+3.3
2,419,064	+				+0.1
2,419,067	-				+0.3
2,419,073	+				-1.8
2,419,073	+				-0.1
2,419,083	+				-0.2
2,419,130	+				-0.3
2,419,138	-				-0.5
2,419,139	+				+0.2
2,419,147	-				-1.1
2,419,172	-				+0.3
2,419,180	-				+0.7
2,419,210	+				-0.3
2,419,234	+				-0.6
2,419,239	+				+1.3
2,419,256	+				+0.7
2,419,285	+				+1.2
2,419,351	+		PGA1_c23300	0.11	+1.3
2,419,361	+		PGA1_c23300	0.12	-2.4
2,419,384	-		PGA1_c23300	0.13	+1.5
2,419,391	-		PGA1_c23300	0.13	+0.3
2,419,400	+		PGA1_c23300	0.13	+0.4
2,419,403	-		PGA1_c23300	0.14	+0.9
2,419,410	+		PGA1_c23300	0.14	+1.8
2,419,410	-		PGA1_c23300	0.14	+1.3
2,419,412	+		PGA1_c23300	0.14	-1.5
2,419,420	-		PGA1_c23300	0.14	+1.4
2,419,432	-		PGA1_c23300	0.15	+0.9
2,419,439	+		PGA1_c23300	0.15	-0.9
2,419,447	-		PGA1_c23300	0.15	+1.1
2,419,450	+		PGA1_c23300	0.15	+0.5
2,419,458	-		PGA1_c23300	0.16	+0.1
2,419,521	+		PGA1_c23300	0.18	+0.9
2,419,529	-		PGA1_c23300	0.19	+1.7
2,419,551	+		PGA1_c23300	0.20	+0.1
2,419,559	-		PGA1_c23300	0.20	+0.2
2,419,629	+		PGA1_c23300	0.23	+1.2
2,419,632	-		PGA1_c23300	0.23	+0.2
2,419,637	-		PGA1_c23300	0.23	-1.0
2,419,690	+		PGA1_c23300	0.25	+0.7
2,419,690	+		PGA1_c23300	0.25	+0.1
2,419,690	+		PGA1_c23300	0.25	+1.1
2,419,701	-		PGA1_c23300	0.26	+1.1
2,419,783	+		PGA1_c23300	0.29	-1.1
2,419,814	+		PGA1_c23300	0.30	-0.9
2,419,822	-		PGA1_c23300	0.31	-0.5
2,419,876	-		PGA1_c23300	0.33	-0.6
2,419,908	+		PGA1_c23300	0.34	+0.9
2,419,917	-		PGA1_c23300	0.35	+0.7
2,419,962	+		PGA1_c23300	0.36	-0.4
2,419,994	-		PGA1_c23300	0.38	-0.6
2,420,048	-		PGA1_c23300	0.40	-0.8