Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22960

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,377,963	+		PGA1_c22950	0.46	-0.2
2,377,971	-		PGA1_c22950	0.46	+0.3
2,377,971	-		PGA1_c22950	0.46	-2.3
2,378,023	+		PGA1_c22950	0.49	+0.9
2,378,063	+		PGA1_c22950	0.51	-0.7
2,378,063	+		PGA1_c22950	0.51	-0.5
2,378,071	-		PGA1_c22950	0.52	-0.1
2,378,071	-		PGA1_c22950	0.52	+1.7
2,378,090	+		PGA1_c22950	0.53	-1.0
2,378,121	+		PGA1_c22950	0.54	+1.4
2,378,129	-		PGA1_c22950	0.55	+1.4
2,378,207	+		PGA1_c22950	0.59	+1.1
2,378,215	-		PGA1_c22950	0.60	-0.9
2,378,245	+		PGA1_c22950	0.62	-0.2
2,378,276	+		PGA1_c22950	0.63	-1.1
2,378,322	+		PGA1_c22950	0.66	+1.5
2,378,402	+		PGA1_c22950	0.70	+0.7
2,378,402	+		PGA1_c22950	0.70	+1.9
2,378,402	+		PGA1_c22950	0.70	-0.4
2,378,402	+		PGA1_c22950	0.70	+1.2
2,378,402	+		PGA1_c22950	0.70	+0.2
2,378,402	+		PGA1_c22950	0.70	+0.3
2,378,402	+		PGA1_c22950	0.70	+1.0
2,378,402	+		PGA1_c22950	0.70	+1.2
2,378,402	+		PGA1_c22950	0.70	+0.7
2,378,402	+		PGA1_c22950	0.70	+0.1
2,378,402	+		PGA1_c22950	0.70	-0.9
2,378,402	+		PGA1_c22950	0.70	+1.8
2,378,402	+		PGA1_c22950	0.70	-0.9
2,378,402	+		PGA1_c22950	0.70	-0.1
2,378,410	-		PGA1_c22950	0.71	-0.4
2,378,410	-		PGA1_c22950	0.71	-1.4
2,378,410	-		PGA1_c22950	0.71	+1.1
2,378,410	-		PGA1_c22950	0.71	-0.4
2,378,410	-		PGA1_c22950	0.71	+0.9
2,378,410	-		PGA1_c22950	0.71	+0.2
2,378,410	-		PGA1_c22950	0.71	+0.9
2,378,410	-		PGA1_c22950	0.71	-0.9
2,378,410	-		PGA1_c22950	0.71	-0.1
2,378,410	-		PGA1_c22950	0.71	+0.6
2,378,410	-		PGA1_c22950	0.71	+1.2
2,378,410	-		PGA1_c22950	0.71	-0.6
2,378,410	-		PGA1_c22950	0.71	-0.4
2,378,410	-		PGA1_c22950	0.71	-0.2
2,378,410	-		PGA1_c22950	0.71	-0.0
2,378,410	-		PGA1_c22950	0.71	-0.1
2,378,410	-		PGA1_c22950	0.71	-0.1
2,378,410	-		PGA1_c22950	0.71	+0.5
2,378,410	-		PGA1_c22950	0.71	-0.6
2,378,410	-		PGA1_c22950	0.71	+0.9
2,378,410	-		PGA1_c22950	0.71	-1.1
2,378,410	-		PGA1_c22950	0.71	+0.4
2,378,417	-		PGA1_c22950	0.71	+0.5
2,378,432	+		PGA1_c22950	0.72	-0.8
2,378,432	+		PGA1_c22950	0.72	+0.2
2,378,437	+		PGA1_c22950	0.72	-0.1
2,378,442	+		PGA1_c22950	0.73	-0.8
2,378,445	-		PGA1_c22950	0.73	+1.2
2,378,445	-		PGA1_c22950	0.73	+0.6
2,378,445	-		PGA1_c22950	0.73	+1.3
2,378,450	-		PGA1_c22950	0.73	-0.7
2,378,450	-		PGA1_c22950	0.73	-1.4
2,378,459	+		PGA1_c22950	0.74	-1.1
2,378,481	+		PGA1_c22950	0.75	+3.4
2,378,481	+		PGA1_c22950	0.75	+1.0
2,378,481	+		PGA1_c22950	0.75	+0.5
2,378,489	-		PGA1_c22950	0.75	+0.6
2,378,489	-		PGA1_c22950	0.75	-1.7
2,378,517	+		PGA1_c22950	0.77	-0.1
2,378,566	-		PGA1_c22950	0.80	-0.3
2,378,578	-		PGA1_c22950	0.80	-1.4
2,378,618	+		PGA1_c22950	0.83	-1.2
2,378,633	+		PGA1_c22950	0.84	+0.6
2,378,640	+		PGA1_c22950	0.84	-0.5
2,378,641	-		PGA1_c22950	0.84	-0.5
2,378,647	+		PGA1_c22950	0.84	+0.7
2,378,652	+		PGA1_c22950	0.85	+0.4
2,378,652	+		PGA1_c22950	0.85	-0.1
2,378,660	-		PGA1_c22950	0.85	-0.1
2,378,737	-		PGA1_c22950	0.89	-0.3
2,378,792	+				-0.3
2,378,812	+				-1.4
2,378,863	+				-1.1
2,378,863	+				+1.0
2,378,863	+				-0.5
2,378,929	-				+1.1
2,378,934	+				+0.9
2,378,981	-				+0.1
2,379,043	+				+0.4
2,379,044	+				+0.9
2,379,051	-				-1.6
2,379,052	-				+0.5
2,379,057	+				-2.3
2,379,065	-				-0.1
2,379,070	-				-0.9
2,379,088	+		PGA1_c22960	0.10	+1.4
2,379,099	+		PGA1_c22960	0.11	+1.2
2,379,103	+		PGA1_c22960	0.11	-0.5
2,379,111	-		PGA1_c22960	0.12	-0.4
2,379,255	+		PGA1_c22960	0.24	+0.3
2,379,260	+		PGA1_c22960	0.24	+2.0
2,379,263	-		PGA1_c22960	0.24	-0.6
2,379,263	-		PGA1_c22960	0.24	+1.3
2,379,268	-		PGA1_c22960	0.25	+0.9
2,379,268	-		PGA1_c22960	0.25	-0.1
2,379,268	-		PGA1_c22960	0.25	-0.0
2,379,438	+		PGA1_c22960	0.38	+0.7
2,379,466	+		PGA1_c22960	0.41	-0.1
2,379,467	-		PGA1_c22960	0.41	+0.6
2,379,474	-		PGA1_c22960	0.41	+2.5
2,379,494	-		PGA1_c22960	0.43	+0.2
2,379,494	-		PGA1_c22960	0.43	-0.9
2,379,494	-		PGA1_c22960	0.43	+0.4
2,379,494	-		PGA1_c22960	0.43	+1.1
2,379,565	+		PGA1_c22960	0.49	-2.0
2,379,592	-		PGA1_c22960	0.51	-0.2
2,379,639	+		PGA1_c22960	0.55	-0.7
2,379,650	-		PGA1_c22960	0.55	+0.0
2,379,654	-		PGA1_c22960	0.56	+0.9
2,379,756	+		PGA1_c22960	0.64	-0.7
2,379,764	-		PGA1_c22960	0.65	-0.8
2,379,764	-		PGA1_c22960	0.65	-1.1
2,379,764	-		PGA1_c22960	0.65	+2.1
2,379,764	-		PGA1_c22960	0.65	-0.1
2,379,769	+		PGA1_c22960	0.65	-0.6
2,379,820	-		PGA1_c22960	0.69	-1.7
2,379,823	-		PGA1_c22960	0.69	+0.7
2,379,838	-		PGA1_c22960	0.71	-0.3
2,379,861	-		PGA1_c22960	0.72	+1.3
2,379,861	-		PGA1_c22960	0.72	+0.5
2,379,871	-		PGA1_c22960	0.73	-0.9
2,379,891	+		PGA1_c22960	0.75	-0.8
2,379,891	+		PGA1_c22960	0.75	+0.0
2,379,950	-		PGA1_c22960	0.80	-0.1
2,379,969	-		PGA1_c22960	0.81	+0.2
2,379,974	-		PGA1_c22960	0.81	+0.5
2,379,974	-		PGA1_c22960	0.81	+0.9
2,379,986	-		PGA1_c22960	0.82	+0.8
2,380,046	+		PGA1_c22960	0.87	+0.8
2,380,046	+		PGA1_c22960	0.87	-3.7
2,380,047	+		PGA1_c22960	0.87	+0.9
2,380,047	+		PGA1_c22960	0.87	+0.0
2,380,047	+		PGA1_c22960	0.87	-0.2
2,380,047	+		PGA1_c22960	0.87	-0.3
2,380,047	+		PGA1_c22960	0.87	-0.5
2,380,047	+		PGA1_c22960	0.87	-0.4
2,380,047	+		PGA1_c22960	0.87	+0.2
2,380,047	+		PGA1_c22960	0.87	+0.3
2,380,047	+		PGA1_c22960	0.87	+0.7
2,380,047	+		PGA1_c22960	0.87	-0.1
2,380,047	+		PGA1_c22960	0.87	-0.3
2,380,047	+		PGA1_c22960	0.87	-0.4
2,380,047	+		PGA1_c22960	0.87	-0.2
2,380,047	+		PGA1_c22960	0.87	-0.8
2,380,047	+		PGA1_c22960	0.87	+0.7
2,380,047	+		PGA1_c22960	0.87	+0.1
2,380,047	+		PGA1_c22960	0.87	+1.6
2,380,047	+		PGA1_c22960	0.87	-0.4
2,380,047	+		PGA1_c22960	0.87	+0.9
2,380,047	+		PGA1_c22960	0.87	-1.6
2,380,047	+		PGA1_c22960	0.87	+0.1
2,380,047	+		PGA1_c22960	0.87	-1.4
2,380,047	+		PGA1_c22960	0.87	-1.7
2,380,047	+		PGA1_c22960	0.87	+0.0
2,380,049	-		PGA1_c22960	0.87	-0.1
2,380,054	-		PGA1_c22960	0.88	+0.1
2,380,054	-		PGA1_c22960	0.88	+0.8
2,380,055	+		PGA1_c22960	0.88	-0.3
2,380,055	-		PGA1_c22960	0.88	-2.1
2,380,055	-		PGA1_c22960	0.88	-0.5
2,380,055	-		PGA1_c22960	0.88	+0.1
2,380,055	-		PGA1_c22960	0.88	+0.4
2,380,055	-		PGA1_c22960	0.88	+0.5
2,380,055	-		PGA1_c22960	0.88	-0.7
2,380,055	-		PGA1_c22960	0.88	-0.1
2,380,055	-		PGA1_c22960	0.88	-0.3
2,380,055	-		PGA1_c22960	0.88	-0.7
2,380,055	-		PGA1_c22960	0.88	-1.7
2,380,055	-		PGA1_c22960	0.88	-1.7
2,380,055	-		PGA1_c22960	0.88	+0.5
2,380,055	-		PGA1_c22960	0.88	+0.4
2,380,055	-		PGA1_c22960	0.88	-0.0
2,380,055	-		PGA1_c22960	0.88	-0.3
2,380,073	-		PGA1_c22960	0.89	-0.2
2,380,081	+				-1.2
2,380,119	+				-0.7
2,380,127	-				-0.4
2,380,131	-				-0.2
2,380,154	+				+0.6
2,380,154	+				-1.0
2,380,154	+				+1.1
2,380,154	+				-2.6
2,380,154	+				+2.9
2,380,154	+				-0.8
2,380,154	+				+0.5
2,380,161	+				+0.6
2,380,161	+				+0.3
2,380,161	+				+0.3
2,380,161	+				+0.7
2,380,161	+				+0.4
2,380,162	-				+0.3
2,380,162	-				+1.6
2,380,162	-				+1.4
2,380,162	-				-1.1
2,380,162	-				+0.9
2,380,162	-				+2.1
2,380,169	-				+0.1
2,380,169	-				-0.9
2,380,169	-				+0.9
2,380,169	-				-0.3
2,380,169	-				+0.3
2,380,169	-				-0.7
2,380,175	+				+0.2
2,380,175	+				+1.3
2,380,175	+				+4.1
2,380,175	+				-1.4
2,380,175	+				+0.3
2,380,181	+				+0.9
2,380,181	+				-0.7
2,380,181	+				-1.4
2,380,181	+				+1.9
2,380,183	-				+0.4
2,380,183	-				+0.1
2,380,183	-				+0.5
2,380,185	+				-0.6
2,380,189	-				-0.3
2,380,189	-				+0.0
2,380,189	-				+0.2
2,380,191	+				+0.6
2,380,214	-				+0.3
2,380,244	+				-0.3
2,380,251	+				+0.1
2,380,251	+				-1.9
2,380,251	+				-1.1
2,380,251	+				+0.9
2,380,252	+				+0.5
2,380,259	-				-0.1
2,380,259	-				+0.3
2,380,259	-				+0.3
2,380,259	-				+0.4
2,380,259	-				+1.4
2,380,259	-				+1.7
2,380,259	-				+1.8
2,380,268	+				+0.9
2,380,274	-				+0.5
2,380,278	+				-0.8
2,380,332	+				+1.1
2,380,332	+				-0.4
2,380,340	-				+0.3
2,380,340	-				-1.1
2,380,355	+				-0.3
2,380,355	+				-0.4
2,380,355	+				+1.6
2,380,360	+				+1.3
2,380,368	-				+0.6
2,380,414	-				-0.1
2,380,444	+				-1.1
2,380,446	+				-1.5
2,380,446	+				+0.5
2,380,463	+				-0.7
2,380,463	+				+0.1
2,380,463	+				-1.2
2,380,463	+				+0.4
2,380,479	+				+0.4
2,380,479	+				+0.6
2,380,479	+				+1.0
2,380,479	+				-2.1
2,380,479	+				+0.7
2,380,487	-				+0.5
2,380,497	-				+1.0
2,380,499	+				-0.8
2,380,507	-				-1.9
2,380,525	-				-0.0
2,380,538	+				+1.9
2,380,540	+				+0.6
2,380,545	+				+0.1
2,380,546	-				+0.2
2,380,563	+				-1.0
2,380,563	+				-1.1
2,380,571	-				-1.6
2,380,571	-				-0.7
2,380,576	-				-1.9
2,380,578	-				+0.2
2,380,584	+				-0.1
2,380,586	-				-0.9
2,380,592	-				+0.2
2,380,594	-				-0.4
2,380,599	+				-0.5
2,380,606	-				-0.2
2,380,630	-				+0.5
2,380,642	-				+1.3
2,380,656	+				-0.3
2,380,656	+				+1.0
2,380,681	+				-0.3
2,380,688	-				-0.6
2,380,689	-				-0.4
2,380,689	-				-0.5
2,380,701	+				+0.2
2,380,737	-				-0.5
2,380,737	-				-0.8
2,380,746	+				+0.5
2,380,746	+				-0.2
2,380,747	-				+1.6
2,380,747	-				-0.1
2,380,747	-				+0.3
2,380,747	-				+0.1
2,380,754	-				+1.7
2,380,769	+				+0.3
2,380,774	+				-0.3
2,380,782	-				-0.0
2,380,782	-				-0.1
2,380,822	+				-0.1
2,380,878	+				-0.5
2,380,886	-				-1.9
2,380,897	+				-0.7
2,380,898	-				+0.4
2,380,903	-				+0.9
2,380,911	+				-0.1
2,380,911	+				+0.1
2,380,911	+				+0.9
2,380,911	+				-1.0
2,380,911	+				-0.1
2,380,911	+				+0.5
2,380,911	+				+0.9
2,380,911	+				+0.9
2,380,911	+				-1.1
2,380,911	+				-1.1
2,380,916	+				+0.5
2,380,919	-				-0.7
2,380,919	-				-0.1
2,380,919	-				+0.3
2,380,919	-				+0.9
2,380,919	-				-1.1
2,380,919	-				-0.9
2,380,955	+				+0.1
2,380,960	+				-1.9
2,380,963	-				+0.4
2,380,963	-				-1.0
2,380,963	-				+0.2
2,380,968	-				-1.7
2,380,968	-				-0.3
2,380,998	+				-0.1
2,381,003	+				+0.3
2,381,003	+				-0.1
2,381,003	+				-0.5
2,381,003	+				-0.4
2,381,005	+				+1.7
2,381,006	-				-0.1
2,381,006	-				+0.3
2,381,088	+				+0.4
2,381,088	+				+0.6
2,381,113	+				+0.1
2,381,120	+				+2.2
2,381,120	+				+0.8
2,381,120	+				-2.1
2,381,137	+				-0.3
2,381,145	+				+0.9
2,381,145	-				+0.6
2,381,145	-				+0.5
2,381,161	-				+0.6
2,381,174	-				+0.1
2,381,197	-				+2.3