Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02110

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02100 and PGA1_c02110 are separated by 66 nucleotidesPGA1_c02110 and PGA1_c02120 are separated by 164 nucleotidesPGA1_c02120 and PGA1_c02130 are separated by 5 nucleotides PGA1_c02100: PGA1_c02100 - diguanylate cyclase (GGDEF) domain-containing protein, at 192,908 to 194,452 _c02100 PGA1_c02110: PGA1_c02110 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 194,519 to 195,406 _c02110 PGA1_c02120: PGA1_c02120 - hypothetical protein, at 195,571 to 196,143 _c02120 PGA1_c02130: PGA1_c02130 - conserved hypothetical protein YidD, at 196,149 to 196,421 _c02130 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 193.524 kb on + strand, within PGA1_c02100at 193.591 kb on + strand, within PGA1_c02100at 193.599 kb on - strand, within PGA1_c02100at 193.649 kb on - strand, within PGA1_c02100at 193.795 kb on + strand, within PGA1_c02100at 193.800 kb on + strand, within PGA1_c02100at 193.834 kb on + strand, within PGA1_c02100at 193.834 kb on + strand, within PGA1_c02100at 193.903 kb on - strand, within PGA1_c02100at 193.930 kb on - strand, within PGA1_c02100at 193.985 kb on - strand, within PGA1_c02100at 194.019 kb on + strand, within PGA1_c02100at 194.027 kb on - strand, within PGA1_c02100at 194.072 kb on - strand, within PGA1_c02100at 194.151 kb on - strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.204 kb on - strand, within PGA1_c02100at 194.240 kb on + strand, within PGA1_c02100at 194.248 kb on - strand, within PGA1_c02100at 194.248 kb on - strand, within PGA1_c02100at 194.430 kb on - strandat 194.453 kb on + strandat 194.453 kb on + strandat 194.461 kb on - strandat 194.468 kb on - strandat 194.494 kb on - strandat 194.500 kb on - strandat 194.596 kb on + strandat 194.604 kb on - strandat 194.625 kb on + strand, within PGA1_c02110at 194.633 kb on - strand, within PGA1_c02110at 194.659 kb on + strand, within PGA1_c02110at 194.669 kb on + strand, within PGA1_c02110at 194.719 kb on + strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.975 kb on - strand, within PGA1_c02110at 194.991 kb on + strand, within PGA1_c02110at 194.992 kb on - strand, within PGA1_c02110at 195.025 kb on - strand, within PGA1_c02110at 195.128 kb on - strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.210 kb on + strand, within PGA1_c02110at 195.210 kb on + strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.218 kb on + strand, within PGA1_c02110at 195.255 kb on - strand, within PGA1_c02110at 195.272 kb on + strand, within PGA1_c02110at 195.415 kb on - strandat 195.475 kb on - strandat 195.486 kb on - strandat 195.530 kb on + strandat 195.556 kb on + strandat 195.556 kb on + strandat 195.562 kb on + strandat 195.562 kb on + strandat 195.564 kb on - strandat 195.570 kb on - strandat 195.617 kb on + strandat 195.672 kb on + strand, within PGA1_c02120at 195.768 kb on + strand, within PGA1_c02120at 195.768 kb on + strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.778 kb on + strand, within PGA1_c02120at 195.778 kb on + strand, within PGA1_c02120at 195.786 kb on - strand, within PGA1_c02120at 195.786 kb on - strand, within PGA1_c02120at 195.788 kb on + strand, within PGA1_c02120at 195.796 kb on - strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.857 kb on - strand, within PGA1_c02120at 195.866 kb on + strand, within PGA1_c02120at 195.891 kb on + strand, within PGA1_c02120at 195.942 kb on - strand, within PGA1_c02120at 195.971 kb on - strand, within PGA1_c02120at 195.979 kb on - strand, within PGA1_c02120at 196.060 kb on + strand, within PGA1_c02120at 196.084 kb on + strand, within PGA1_c02120at 196.100 kb on + strandat 196.108 kb on - strandat 196.118 kb on - strandat 196.127 kb on + strandat 196.147 kb on + strandat 196.198 kb on - strand, within PGA1_c02130at 196.211 kb on - strand, within PGA1_c02130at 196.360 kb on + strand, within PGA1_c02130at 196.373 kb on + strand, within PGA1_c02130

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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193,524 + PGA1_c02100 0.40 +1.3
193,591 + PGA1_c02100 0.44 -2.6
193,599 - PGA1_c02100 0.45 -1.4
193,649 - PGA1_c02100 0.48 +1.7
193,795 + PGA1_c02100 0.57 +2.1
193,800 + PGA1_c02100 0.58 -0.3
193,834 + PGA1_c02100 0.60 -1.1
193,834 + PGA1_c02100 0.60 -1.7
193,903 - PGA1_c02100 0.64 -0.3
193,930 - PGA1_c02100 0.66 +0.5
193,985 - PGA1_c02100 0.70 +0.3
194,019 + PGA1_c02100 0.72 -1.7
194,027 - PGA1_c02100 0.72 +0.6
194,072 - PGA1_c02100 0.75 -2.6
194,151 - PGA1_c02100 0.80 -2.3
194,174 + PGA1_c02100 0.82 -1.9
194,174 + PGA1_c02100 0.82 -1.3
194,174 + PGA1_c02100 0.82 +2.3
194,174 + PGA1_c02100 0.82 -1.2
194,182 - PGA1_c02100 0.82 -0.1
194,182 - PGA1_c02100 0.82 -1.7
194,182 - PGA1_c02100 0.82 -0.4
194,182 - PGA1_c02100 0.82 +1.1
194,182 - PGA1_c02100 0.82 -1.2
194,204 - PGA1_c02100 0.84 -1.0
194,240 + PGA1_c02100 0.86 -2.2
194,248 - PGA1_c02100 0.87 +1.1
194,248 - PGA1_c02100 0.87 -3.1
194,430 - +0.1
194,453 + +0.1
194,453 + -1.3
194,461 - +1.4
194,468 - +0.1
194,494 - -0.6
194,500 - +0.0
194,596 + +0.6
194,604 - -3.4
194,625 + PGA1_c02110 0.12 +0.7
194,633 - PGA1_c02110 0.13 +1.1
194,659 + PGA1_c02110 0.16 -0.4
194,669 + PGA1_c02110 0.17 -1.9
194,719 + PGA1_c02110 0.23 +1.6
194,946 - PGA1_c02110 0.48 -0.4
194,946 - PGA1_c02110 0.48 +0.8
194,946 - PGA1_c02110 0.48 +0.5
194,946 - PGA1_c02110 0.48 +0.7
194,975 - PGA1_c02110 0.51 +0.4
194,991 + PGA1_c02110 0.53 +1.4
194,992 - PGA1_c02110 0.53 -0.4
195,025 - PGA1_c02110 0.57 +0.1
195,128 - PGA1_c02110 0.69 +0.1
195,208 + PGA1_c02110 0.78 +1.7
195,208 + PGA1_c02110 0.78 -1.4
195,208 + PGA1_c02110 0.78 +0.7
195,208 + PGA1_c02110 0.78 -0.3
195,208 + PGA1_c02110 0.78 -0.7
195,208 + PGA1_c02110 0.78 +0.8
195,208 + PGA1_c02110 0.78 +0.7
195,208 + PGA1_c02110 0.78 -0.9
195,208 + PGA1_c02110 0.78 -0.8
195,208 + PGA1_c02110 0.78 +0.6
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 +2.1
195,208 + PGA1_c02110 0.78 -0.5
195,208 + PGA1_c02110 0.78 +2.3
195,208 + PGA1_c02110 0.78 -1.4
195,208 + PGA1_c02110 0.78 +0.3
195,208 + PGA1_c02110 0.78 +0.1
195,208 + PGA1_c02110 0.78 +0.7
195,208 + PGA1_c02110 0.78 +0.1
195,208 + PGA1_c02110 0.78 +1.1
195,208 + PGA1_c02110 0.78 -1.7
195,210 + PGA1_c02110 0.78 +0.6
195,210 + PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 +1.5
195,216 - PGA1_c02110 0.78 -0.7
195,216 - PGA1_c02110 0.78 -0.9
195,216 - PGA1_c02110 0.78 -0.4
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 +0.6
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 +1.1
195,216 - PGA1_c02110 0.78 +0.0
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 -0.4
195,216 - PGA1_c02110 0.78 -2.6
195,216 - PGA1_c02110 0.78 -0.4
195,216 - PGA1_c02110 0.78 -1.0
195,216 - PGA1_c02110 0.78 +0.6
195,216 - PGA1_c02110 0.78 -0.3
195,216 - PGA1_c02110 0.78 +0.7
195,216 - PGA1_c02110 0.78 +2.0
195,216 - PGA1_c02110 0.78 -1.2
195,216 - PGA1_c02110 0.78 +0.3
195,216 - PGA1_c02110 0.78 +2.7
195,216 - PGA1_c02110 0.78 +0.6
195,216 - PGA1_c02110 0.78 +1.1
195,216 - PGA1_c02110 0.78 +1.6
195,216 - PGA1_c02110 0.78 +4.0
195,216 - PGA1_c02110 0.78 -1.4
195,216 - PGA1_c02110 0.78 +0.6
195,216 - PGA1_c02110 0.78 +0.3
195,216 - PGA1_c02110 0.78 -1.6
195,218 + PGA1_c02110 0.79 +0.9
195,255 - PGA1_c02110 0.83 +0.0
195,272 + PGA1_c02110 0.85 -0.2
195,415 - +0.4
195,475 - +0.6
195,486 - +1.5
195,530 + -0.9
195,556 + -1.7
195,556 + +1.4
195,562 + +1.6
195,562 + +1.0
195,564 - -0.4
195,570 - +1.8
195,617 + +0.2
195,672 + PGA1_c02120 0.18 +0.2
195,768 + PGA1_c02120 0.34 +1.5
195,768 + PGA1_c02120 0.34 +0.3
195,776 - PGA1_c02120 0.36 -1.4
195,776 - PGA1_c02120 0.36 +1.1
195,776 - PGA1_c02120 0.36 +0.4
195,778 + PGA1_c02120 0.36 +3.7
195,778 + PGA1_c02120 0.36 +0.7
195,786 - PGA1_c02120 0.38 +0.5
195,786 - PGA1_c02120 0.38 +0.1
195,788 + PGA1_c02120 0.38 -0.9
195,796 - PGA1_c02120 0.39 -1.2
195,821 + PGA1_c02120 0.44 -0.1
195,821 + PGA1_c02120 0.44 +0.6
195,821 + PGA1_c02120 0.44 +2.0
195,829 - PGA1_c02120 0.45 -0.3
195,829 - PGA1_c02120 0.45 -2.3
195,829 - PGA1_c02120 0.45 -2.7
195,857 - PGA1_c02120 0.50 +2.1
195,866 + PGA1_c02120 0.51 +0.1
195,891 + PGA1_c02120 0.56 -0.9
195,942 - PGA1_c02120 0.65 -1.7
195,971 - PGA1_c02120 0.70 +0.8
195,979 - PGA1_c02120 0.71 -1.2
196,060 + PGA1_c02120 0.85 -0.4
196,084 + PGA1_c02120 0.90 -0.4
196,100 + +0.6
196,108 - +1.1
196,118 - +1.0
196,127 + -0.4
196,147 + -2.3
196,198 - PGA1_c02130 0.18 +0.7
196,211 - PGA1_c02130 0.23 +0.1
196,360 + PGA1_c02130 0.77 -0.1
196,373 + PGA1_c02130 0.82 -0.9

Or see this region's nucleotide sequence