Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16620

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,727,174	+		PGA1_c16600	0.76	+0.3
1,727,192	-		PGA1_c16600	0.77	+1.1
1,727,226	+		PGA1_c16600	0.80	+1.4
1,727,238	+		PGA1_c16600	0.81	-0.1
1,727,259	+		PGA1_c16600	0.83	+0.3
1,727,259	+		PGA1_c16600	0.83	+1.0
1,727,259	+		PGA1_c16600	0.83	+0.9
1,727,267	-		PGA1_c16600	0.83	+1.3
1,727,267	-		PGA1_c16600	0.83	-0.1
1,727,274	+		PGA1_c16600	0.84	+1.3
1,727,282	-		PGA1_c16600	0.85	-0.1
1,727,288	-		PGA1_c16600	0.85	+1.0
1,727,318	+		PGA1_c16600	0.88	-0.1
1,727,318	+		PGA1_c16600	0.88	+2.4
1,727,318	+		PGA1_c16600	0.88	+1.7
1,727,326	-		PGA1_c16600	0.88	+0.7
1,727,453	-				+0.9
1,727,656	+		PGA1_c16610	0.19	+0.4
1,727,664	-		PGA1_c16610	0.21	+0.1
1,727,669	+		PGA1_c16610	0.22	+1.9
1,727,669	+		PGA1_c16610	0.22	+0.9
1,727,669	+		PGA1_c16610	0.22	-0.1
1,727,669	+		PGA1_c16610	0.22	+1.0
1,727,669	+		PGA1_c16610	0.22	-1.1
1,727,669	+		PGA1_c16610	0.22	+0.3
1,727,669	+		PGA1_c16610	0.22	-1.7
1,727,669	+		PGA1_c16610	0.22	-0.3
1,727,669	+		PGA1_c16610	0.22	-0.4
1,727,669	+		PGA1_c16610	0.22	-0.7
1,727,669	+		PGA1_c16610	0.22	+0.9
1,727,669	+		PGA1_c16610	0.22	-0.1
1,727,673	+		PGA1_c16610	0.23	+0.6
1,727,677	-		PGA1_c16610	0.24	-1.1
1,727,677	-		PGA1_c16610	0.24	+1.0
1,727,677	-		PGA1_c16610	0.24	+0.9
1,727,677	-		PGA1_c16610	0.24	+1.1
1,727,677	-		PGA1_c16610	0.24	+0.9
1,727,677	-		PGA1_c16610	0.24	+1.2
1,727,681	-		PGA1_c16610	0.25	+1.3
1,727,722	+		PGA1_c16610	0.33	+0.3
1,727,722	+		PGA1_c16610	0.33	+1.1
1,727,725	-		PGA1_c16610	0.34	+0.3
1,727,749	+		PGA1_c16610	0.38	+1.4
1,727,749	+		PGA1_c16610	0.38	+0.3
1,727,749	+		PGA1_c16610	0.38	+0.9
1,727,757	-		PGA1_c16610	0.40	-0.1
1,727,757	-		PGA1_c16610	0.40	+1.4
1,727,757	-		PGA1_c16610	0.40	+0.0
1,727,757	-		PGA1_c16610	0.40	+0.2
1,727,844	+		PGA1_c16610	0.58	+0.0
1,727,852	-		PGA1_c16610	0.60	+0.3
1,727,970	+		PGA1_c16610	0.84	-0.7
1,727,990	+		PGA1_c16610	0.88	+0.1
1,727,993	-		PGA1_c16610	0.88	-2.8
1,728,021	+				+0.4
1,728,022	+				-0.7
1,728,029	-				+1.1
1,728,029	-				+1.3
1,728,036	-				-0.1
1,728,089	+				+0.3
1,728,089	+				+2.9
1,728,089	+				+1.2
1,728,096	-				-0.1
1,728,104	+				-0.4
1,728,107	-				+1.9
1,728,129	-				-0.6
1,728,175	-				-1.5
1,728,196	-				-1.1
1,728,224	-				+1.7
1,728,231	-				-0.1
1,728,296	+				-0.1
1,728,296	+				-2.2
1,728,304	-				-1.1
1,728,304	-				+0.3
1,728,311	+				+0.3
1,728,319	-				-0.1
1,728,403	-		PGA1_c16620	0.13	+0.9
1,728,417	+		PGA1_c16620	0.14	-1.1
1,728,519	-		PGA1_c16620	0.20	-1.0
1,728,521	-		PGA1_c16620	0.20	+0.3
1,728,531	-		PGA1_c16620	0.20	+0.3
1,728,531	-		PGA1_c16620	0.20	+0.6
1,728,538	-		PGA1_c16620	0.21	-1.0
1,728,565	-		PGA1_c16620	0.22	+0.9
1,728,565	-		PGA1_c16620	0.22	+0.4
1,728,567	+		PGA1_c16620	0.22	-1.2
1,728,599	-		PGA1_c16620	0.24	-0.1
1,728,681	+		PGA1_c16620	0.29	-0.1
1,728,682	+		PGA1_c16620	0.29	+0.9
1,728,682	+		PGA1_c16620	0.29	+1.3
1,728,690	-		PGA1_c16620	0.29	-0.4
1,728,690	-		PGA1_c16620	0.29	+2.7
1,728,727	-		PGA1_c16620	0.31	+0.1
1,728,732	+		PGA1_c16620	0.32	+0.7
1,728,740	-		PGA1_c16620	0.32	+0.9
1,728,840	+		PGA1_c16620	0.38	+1.9
1,728,848	-		PGA1_c16620	0.38	-0.1
1,728,850	-		PGA1_c16620	0.38	+0.1
1,728,862	+		PGA1_c16620	0.39	+0.9
1,728,925	+		PGA1_c16620	0.42	+1.7
1,728,941	+		PGA1_c16620	0.43	-1.7
1,728,947	+		PGA1_c16620	0.44	+2.7
1,729,021	-		PGA1_c16620	0.48	-0.3
1,729,045	+		PGA1_c16620	0.49	+0.4
1,729,071	-		PGA1_c16620	0.51	+0.2
1,729,108	-		PGA1_c16620	0.53	+0.5
1,729,178	+		PGA1_c16620	0.57	+0.9
1,729,178	+		PGA1_c16620	0.57	+1.9
1,729,196	-		PGA1_c16620	0.58	+2.1
1,729,201	-		PGA1_c16620	0.58	-0.6
1,729,208	+		PGA1_c16620	0.58	+1.3
1,729,231	+		PGA1_c16620	0.60	+0.3
1,729,241	+		PGA1_c16620	0.60	-0.6
1,729,241	+		PGA1_c16620	0.60	+0.9
1,729,244	+		PGA1_c16620	0.60	-0.2
1,729,249	-		PGA1_c16620	0.61	+1.9
1,729,263	+		PGA1_c16620	0.62	+0.6
1,729,271	-		PGA1_c16620	0.62	+1.3
1,729,271	-		PGA1_c16620	0.62	+0.4
1,729,271	-		PGA1_c16620	0.62	+0.9
1,729,302	+		PGA1_c16620	0.64	-0.7
1,729,355	+		PGA1_c16620	0.67	+0.5
1,729,374	+		PGA1_c16620	0.68	+0.5
1,729,434	+		PGA1_c16620	0.71	-0.9
1,729,456	+		PGA1_c16620	0.72	-1.5
1,729,459	-		PGA1_c16620	0.73	+0.3
1,729,490	+		PGA1_c16620	0.74	-0.1
1,729,573	-		PGA1_c16620	0.79	-0.1
1,729,583	+		PGA1_c16620	0.80	-1.0
1,729,583	+		PGA1_c16620	0.80	+0.6
1,729,591	-		PGA1_c16620	0.80	-0.8
1,729,591	-		PGA1_c16620	0.80	+2.9
1,729,591	-		PGA1_c16620	0.80	+2.0
1,729,605	+		PGA1_c16620	0.81	-0.1
1,729,636	+		PGA1_c16620	0.83	-0.6
1,729,684	+		PGA1_c16620	0.85	-0.4
1,729,695	+		PGA1_c16620	0.86	+2.1
1,729,775	+				-0.8
1,729,775	+				+0.5
1,729,775	+				-1.5
1,729,783	-				-1.5
1,729,829	-				-1.0
1,729,891	-				+1.0
1,729,894	+				-0.4
1,729,936	+				+0.4
1,730,041	-				-1.1
1,730,082	+				-1.7
1,730,108	+				-0.3
1,730,108	+				+1.7
1,730,125	-				-0.6
1,730,130	+				-0.7
1,730,130	+				-1.3
1,730,130	+				-0.6
1,730,130	+				-0.0
1,730,130	+				+0.5
1,730,130	+				-0.1
1,730,131	-				+0.1
1,730,138	-				+3.4
1,730,138	-				-1.7
1,730,153	+				+0.9
1,730,153	+				+1.1
1,730,153	+				+1.0
1,730,153	+				+1.7
1,730,153	+				-0.1
1,730,153	+				+0.5
1,730,161	-				+0.2
1,730,161	-				-0.4
1,730,161	-				-0.5
1,730,161	-				-0.7
1,730,162	-				+1.4
1,730,185	-				+0.1
1,730,219	+				+0.4
1,730,219	+				-1.1
1,730,219	+				-0.7
1,730,219	+				+0.0
1,730,227	-		PGA1_c16630	0.10	+2.6
1,730,227	-		PGA1_c16630	0.10	-0.9
1,730,227	-		PGA1_c16630	0.10	+0.4
1,730,227	-		PGA1_c16630	0.10	-0.9
1,730,227	-		PGA1_c16630	0.10	+0.5
1,730,227	-		PGA1_c16630	0.10	+0.4
1,730,227	-		PGA1_c16630	0.10	-0.4
1,730,227	-		PGA1_c16630	0.10	+1.4
1,730,240	-		PGA1_c16630	0.11	-0.9
1,730,256	+		PGA1_c16630	0.12	+0.4
1,730,262	+		PGA1_c16630	0.13	+0.9
1,730,304	-		PGA1_c16630	0.16	-0.9
1,730,310	+		PGA1_c16630	0.16	-0.1
1,730,310	+		PGA1_c16630	0.16	+0.2
1,730,310	+		PGA1_c16630	0.16	+3.2
1,730,310	+		PGA1_c16630	0.16	+1.3
1,730,310	+		PGA1_c16630	0.16	+0.2
1,730,310	+		PGA1_c16630	0.16	+1.2
1,730,310	+		PGA1_c16630	0.16	+1.2
1,730,310	+		PGA1_c16630	0.16	+0.3
1,730,315	+		PGA1_c16630	0.16	+0.5
1,730,315	+		PGA1_c16630	0.16	+0.7
1,730,318	-		PGA1_c16630	0.17	+0.0
1,730,318	-		PGA1_c16630	0.17	+2.4
1,730,318	-		PGA1_c16630	0.17	+1.9
1,730,318	-		PGA1_c16630	0.17	-0.3
1,730,318	-		PGA1_c16630	0.17	+0.4
1,730,318	-		PGA1_c16630	0.17	-2.7
1,730,338	-		PGA1_c16630	0.18	+0.5
1,730,405	+		PGA1_c16630	0.23	+1.7
1,730,411	+		PGA1_c16630	0.23	-1.1
1,730,413	-		PGA1_c16630	0.23	+0.0
1,730,433	-		PGA1_c16630	0.25	+0.5
1,730,460	+		PGA1_c16630	0.26	-1.7
1,730,493	+		PGA1_c16630	0.29	+0.3
1,730,493	+		PGA1_c16630	0.29	-0.1
1,730,511	-		PGA1_c16630	0.30	+1.1
1,730,525	-		PGA1_c16630	0.31	+0.4
1,730,549	+		PGA1_c16630	0.33	-0.1
1,730,557	-		PGA1_c16630	0.33	-0.2
1,730,564	-		PGA1_c16630	0.34	-2.0
1,730,631	+		PGA1_c16630	0.38	-0.7
1,730,639	-		PGA1_c16630	0.39	+0.4
1,730,822	+		PGA1_c16630	0.51	-0.6
1,730,862	-		PGA1_c16630	0.54	+0.3
1,730,933	-		PGA1_c16630	0.59	+0.9
1,730,933	-		PGA1_c16630	0.59	+1.0
1,730,933	-		PGA1_c16630	0.59	-1.0
1,730,943	+		PGA1_c16630	0.60	-0.1