Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14830 and PGA1_c14840 are separated by 1 nucleotides PGA1_c14840 and PGA1_c14850 are separated by 128 nucleotides PGA1_c14850 and PGA1_c14860 overlap by 1 nucleotides
PGA1_c14830: PGA1_c14830 - trk system potassium uptake protein TrkA, at 1,537,897 to 1,539,273
_c14830
PGA1_c14840: PGA1_c14840 - putative trk system potassium uptake protein TrkH, at 1,539,275 to 1,540,822
_c14840
PGA1_c14850: PGA1_c14850 - protein hfq (RNA chaperone hfq), at 1,540,951 to 1,541,190
_c14850
PGA1_c14860: PGA1_c14860 - GTP-binding protein HflX, at 1,541,190 to 1,542,461
_c14860
Position (kb) 1539
1540
1541 Strain fitness (log2 ratio) -1
0
1
2 at 1540.795 kb on + strand at 1540.800 kb on + strand at 1541.166 kb on + strand, within PGA1_c14850 at 1541.193 kb on + strand at 1541.224 kb on - strand at 1541.364 kb on + strand, within PGA1_c14860 at 1541.372 kb on + strand, within PGA1_c14860 at 1541.372 kb on - strand, within PGA1_c14860 at 1541.423 kb on + strand, within PGA1_c14860 at 1541.431 kb on - strand, within PGA1_c14860 at 1541.440 kb on - strand, within PGA1_c14860 at 1541.514 kb on + strand, within PGA1_c14860 at 1541.551 kb on + strand, within PGA1_c14860 at 1541.559 kb on + strand, within PGA1_c14860 at 1541.615 kb on + strand, within PGA1_c14860 at 1541.618 kb on - strand, within PGA1_c14860 at 1541.623 kb on - strand, within PGA1_c14860 at 1541.679 kb on - strand, within PGA1_c14860 at 1541.738 kb on + strand, within PGA1_c14860
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,540,795 + +0.9 1,540,800 + +0.9 1,541,166 + PGA1_c14850 0.90 +0.1 1,541,193 + -0.3 1,541,224 - -0.2 1,541,364 + PGA1_c14860 0.14 +0.7 1,541,372 + PGA1_c14860 0.14 -0.2 1,541,372 - PGA1_c14860 0.14 +1.1 1,541,423 + PGA1_c14860 0.18 -1.3 1,541,431 - PGA1_c14860 0.19 -0.7 1,541,440 - PGA1_c14860 0.20 -1.3 1,541,514 + PGA1_c14860 0.25 +0.6 1,541,551 + PGA1_c14860 0.28 +1.0 1,541,559 + PGA1_c14860 0.29 -0.1 1,541,615 + PGA1_c14860 0.33 +1.6 1,541,618 - PGA1_c14860 0.34 +2.5 1,541,623 - PGA1_c14860 0.34 +0.3 1,541,679 - PGA1_c14860 0.38 +1.1 1,541,738 + PGA1_c14860 0.43 -0.1
Or see this region's nucleotide sequence