Strain Fitness in Dechlorosoma suillum PS around Dsui_3071

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3069 and Dsui_3070 are separated by 58 nucleotidesDsui_3070 and Dsui_3071 overlap by 70 nucleotidesDsui_3071 and Dsui_3072 are separated by 97 nucleotides Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343 _3069 Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253 _3070 Dsui_3071: Dsui_3071 - SprA-related family, at 3,286,184 to 3,286,972 _3071 Dsui_3072: Dsui_3072 - DNA repair protein RecN, at 3,287,070 to 3,288,725 _3072 Position (kb) 3286 3287Strain fitness (log2 ratio) -2 -1 0 1 2at 3285.202 kb on + strand, within Dsui_3069at 3285.228 kb on - strandat 3285.263 kb on + strand, within Dsui_3069at 3285.323 kb on - strandat 3285.390 kb on - strandat 3285.425 kb on + strandat 3285.454 kb on - strandat 3285.521 kb on - strand, within Dsui_3070at 3285.528 kb on + strand, within Dsui_3070at 3285.583 kb on - strand, within Dsui_3070at 3285.601 kb on + strand, within Dsui_3070at 3285.672 kb on + strand, within Dsui_3070at 3285.711 kb on - strand, within Dsui_3070at 3285.769 kb on + strand, within Dsui_3070at 3285.771 kb on - strand, within Dsui_3070at 3285.777 kb on - strand, within Dsui_3070at 3285.777 kb on - strand, within Dsui_3070at 3285.782 kb on - strand, within Dsui_3070at 3285.883 kb on + strand, within Dsui_3070at 3285.890 kb on - strand, within Dsui_3070at 3285.999 kb on + strand, within Dsui_3070at 3286.006 kb on - strand, within Dsui_3070at 3286.342 kb on + strand, within Dsui_3071at 3286.351 kb on + strand, within Dsui_3071at 3286.376 kb on - strand, within Dsui_3071at 3286.497 kb on - strand, within Dsui_3071at 3286.518 kb on + strand, within Dsui_3071at 3286.592 kb on - strand, within Dsui_3071at 3286.640 kb on - strand, within Dsui_3071at 3286.640 kb on - strand, within Dsui_3071at 3286.665 kb on + strand, within Dsui_3071at 3286.684 kb on + strandat 3286.776 kb on - strand, within Dsui_3071at 3286.988 kb on - strandat 3287.299 kb on + strandat 3287.446 kb on + strandat 3287.922 kb on - strand, within Dsui_3072at 3287.950 kb on - strand, within Dsui_3072

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,285,202 + Dsui_3069 0.75 -0.7
3,285,228 - +1.6
3,285,263 + Dsui_3069 0.86 -1.3
3,285,323 - +0.6
3,285,390 - -0.3
3,285,425 + +0.4
3,285,454 - -0.9
3,285,521 - Dsui_3070 0.14 -0.4
3,285,528 + Dsui_3070 0.15 -0.5
3,285,583 - Dsui_3070 0.21 +0.9
3,285,601 + Dsui_3070 0.23 +0.5
3,285,672 + Dsui_3070 0.32 -0.4
3,285,711 - Dsui_3070 0.36 +0.0
3,285,769 + Dsui_3070 0.43 -0.3
3,285,771 - Dsui_3070 0.43 +0.1
3,285,777 - Dsui_3070 0.44 -0.8
3,285,777 - Dsui_3070 0.44 +0.6
3,285,782 - Dsui_3070 0.45 -0.5
3,285,883 + Dsui_3070 0.56 +0.2
3,285,890 - Dsui_3070 0.57 +0.6
3,285,999 + Dsui_3070 0.70 +0.8
3,286,006 - Dsui_3070 0.71 -0.2
3,286,342 + Dsui_3071 0.20 +0.1
3,286,351 + Dsui_3071 0.21 -0.7
3,286,376 - Dsui_3071 0.24 +0.3
3,286,497 - Dsui_3071 0.40 -0.8
3,286,518 + Dsui_3071 0.42 +1.8
3,286,592 - Dsui_3071 0.52 -0.6
3,286,640 - Dsui_3071 0.58 +0.3
3,286,640 - Dsui_3071 0.58 -0.1
3,286,665 + Dsui_3071 0.61 -0.3
3,286,684 + +0.6
3,286,776 - Dsui_3071 0.75 -0.2
3,286,988 - -1.2
3,287,299 + +0.6
3,287,446 + +1.6
3,287,922 - Dsui_3072 0.51 -1.9
3,287,950 - Dsui_3072 0.53 -1.2

Or see this region's nucleotide sequence