Strain Fitness in Dechlorosoma suillum PS around Dsui_2919

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2917 and Dsui_2918 are separated by 32 nucleotidesDsui_2918 and Dsui_2919 are separated by 161 nucleotidesDsui_2919 and Dsui_2920 are separated by 47 nucleotides Dsui_2917: Dsui_2917 - hypothetical protein, at 3,119,174 to 3,119,572 _2917 Dsui_2918: Dsui_2918 - hypothetical protein, at 3,119,605 to 3,120,285 _2918 Dsui_2919: Dsui_2919 - addiction module antidote protein, HigA family, at 3,120,447 to 3,120,761 _2919 Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239 _2920 Position (kb) 3120 3121Strain fitness (log2 ratio) -1 0 1at 3119.595 kb on - strandat 3119.595 kb on - strandat 3119.636 kb on + strandat 3119.700 kb on - strandat 3119.758 kb on - strandat 3119.987 kb on - strandat 3119.991 kb on + strandat 3120.110 kb on - strandat 3120.160 kb on - strandat 3120.367 kb on + strandat 3120.463 kb on + strandat 3120.465 kb on + strandat 3120.478 kb on + strandat 3120.486 kb on - strandat 3120.488 kb on + strand, within Dsui_2919at 3120.488 kb on + strandat 3120.598 kb on + strandat 3120.598 kb on + strand, within Dsui_2919at 3120.600 kb on + strand, within Dsui_2919at 3120.702 kb on + strand, within Dsui_2919at 3120.770 kb on + strandat 3120.850 kb on - strandat 3120.891 kb on + strandat 3120.891 kb on + strandat 3121.005 kb on + strand, within Dsui_2920at 3121.024 kb on + strand, within Dsui_2920at 3121.262 kb on - strandat 3121.267 kb on - strandat 3121.750 kb on + strand, within Dsui_2920

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,119,595 - +1.7
3,119,595 - +0.1
3,119,636 + +0.7
3,119,700 - +0.7
3,119,758 - +0.7
3,119,987 - +0.7
3,119,991 + -0.3
3,120,110 - +0.7
3,120,160 - +1.7
3,120,367 + +1.7
3,120,463 + -0.2
3,120,465 + +1.1
3,120,478 + -0.0
3,120,486 - +0.7
3,120,488 + Dsui_2919 0.13 +0.8
3,120,488 + +0.7
3,120,598 + +0.1
3,120,598 + Dsui_2919 0.48 -0.3
3,120,600 + Dsui_2919 0.49 -0.1
3,120,702 + Dsui_2919 0.81 +1.1
3,120,770 + +1.1
3,120,850 - +0.7
3,120,891 + +0.2
3,120,891 + +0.6
3,121,005 + Dsui_2920 0.14 -1.5
3,121,024 + Dsui_2920 0.15 -0.3
3,121,262 - +1.7
3,121,267 - +0.7
3,121,750 + Dsui_2920 0.66 +0.8

Or see this region's nucleotide sequence