Strain Fitness in Dechlorosoma suillum PS around Dsui_2860

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2859 and Dsui_2860 are separated by 36 nucleotidesDsui_2860 and Dsui_2861 are separated by 125 nucleotides Dsui_2859: Dsui_2859 - hypothetical protein, at 3,048,887 to 3,049,954 _2859 Dsui_2860: Dsui_2860 - single-stranded-DNA-specific exonuclease RecJ, at 3,049,991 to 3,051,688 _2860 Dsui_2861: Dsui_2861 - DMT(drug/metabolite transporter) superfamily permease, at 3,051,814 to 3,052,710 _2861 Position (kb) 3049 3050 3051 3052Strain fitness (log2 ratio) -1 0 1at 3049.954 kb on + strandat 3049.954 kb on + strandat 3051.848 kb on + strandat 3051.919 kb on - strand, within Dsui_2861at 3052.074 kb on - strand, within Dsui_2861at 3052.156 kb on - strand, within Dsui_2861at 3052.180 kb on - strand, within Dsui_2861at 3052.254 kb on - strand, within Dsui_2861at 3052.379 kb on + strand, within Dsui_2861at 3052.384 kb on + strand, within Dsui_2861at 3052.392 kb on - strand, within Dsui_2861at 3052.600 kb on - strand, within Dsui_2861at 3052.639 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
3,049,954 + +0.2
3,049,954 + -0.4
3,051,848 + +0.3
3,051,919 - Dsui_2861 0.12 -0.5
3,052,074 - Dsui_2861 0.29 +0.3
3,052,156 - Dsui_2861 0.38 +0.3
3,052,180 - Dsui_2861 0.41 +0.0
3,052,254 - Dsui_2861 0.49 -0.1
3,052,379 + Dsui_2861 0.63 +1.1
3,052,384 + Dsui_2861 0.64 -0.2
3,052,392 - Dsui_2861 0.64 -0.6
3,052,600 - Dsui_2861 0.88 -0.8
3,052,639 - +1.3

Or see this region's nucleotide sequence