Strain Fitness in Dechlorosoma suillum PS around Dsui_2701

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2699 and Dsui_2700 are separated by 13 nucleotidesDsui_2700 and Dsui_2701 overlap by 17 nucleotidesDsui_2701 and Dsui_2702 overlap by 1 nucleotides Dsui_2699: Dsui_2699 - hypoxanthine-guanine phosphoribosyltransferase, at 2,851,698 to 2,852,246 _2699 Dsui_2700: Dsui_2700 - UTP-glucose-1-phosphate uridylyltransferase, at 2,852,260 to 2,853,126 _2700 Dsui_2701: Dsui_2701 - DNA ligase, NAD-dependent, at 2,853,110 to 2,855,500 _2701 Dsui_2702: Dsui_2702 - cell division protein, at 2,855,500 to 2,856,933 _2702 Position (kb) 2853 2854 2855 2856Strain fitness (log2 ratio) -2 -1 0 1 2at 2852.120 kb on - strand, within Dsui_2699at 2852.129 kb on + strand, within Dsui_2699at 2852.242 kb on + strandat 2852.242 kb on + strandat 2852.242 kb on + strandat 2852.250 kb on - strandat 2852.250 kb on - strandat 2852.250 kb on - strandat 2855.469 kb on + strandat 2855.642 kb on - strandat 2855.809 kb on - strand, within Dsui_2702at 2856.054 kb on - strand, within Dsui_2702at 2856.466 kb on - strand, within Dsui_2702

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
2,852,120 - Dsui_2699 0.77 -0.6
2,852,129 + Dsui_2699 0.79 +1.3
2,852,242 + +0.2
2,852,242 + -1.2
2,852,242 + +1.8
2,852,250 - +0.3
2,852,250 - -0.4
2,852,250 - +0.6
2,855,469 + -0.2
2,855,642 - -2.0
2,855,809 - Dsui_2702 0.22 -0.1
2,856,054 - Dsui_2702 0.39 -2.3
2,856,466 - Dsui_2702 0.67 +1.2

Or see this region's nucleotide sequence