Strain Fitness in Dechlorosoma suillum PS around Dsui_2368

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2366 and Dsui_2367 are separated by 101 nucleotidesDsui_2367 and Dsui_2368 are separated by 54 nucleotidesDsui_2368 and Dsui_2369 are separated by 60 nucleotidesDsui_2369 and Dsui_2370 are separated by 16 nucleotides Dsui_2366: Dsui_2366 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 2,517,717 to 2,518,520 _2366 Dsui_2367: Dsui_2367 - RNA methyltransferase, TrmH family, group 1, at 2,518,622 to 2,519,401 _2367 Dsui_2368: Dsui_2368 - serine O-acetyltransferase, at 2,519,456 to 2,520,211 _2368 Dsui_2369: Dsui_2369 - iron-sulfur cluster assembly transcription factor IscR, at 2,520,272 to 2,520,748 _2369 Dsui_2370: Dsui_2370 - cysteine desulfurase family protein, at 2,520,765 to 2,521,922 _2370 Position (kb) 2519 2520 2521Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2518.638 kb on + strandat 2518.648 kb on + strandat 2518.680 kb on - strandat 2518.725 kb on + strand, within Dsui_2367at 2518.730 kb on + strand, within Dsui_2367at 2518.740 kb on + strand, within Dsui_2367at 2518.839 kb on + strand, within Dsui_2367at 2518.884 kb on + strand, within Dsui_2367at 2518.968 kb on + strand, within Dsui_2367at 2518.979 kb on + strand, within Dsui_2367at 2519.005 kb on + strand, within Dsui_2367at 2519.070 kb on + strand, within Dsui_2367at 2519.103 kb on + strand, within Dsui_2367at 2519.184 kb on + strand, within Dsui_2367at 2519.306 kb on + strand, within Dsui_2367at 2519.370 kb on - strandat 2519.374 kb on + strandat 2519.450 kb on + strandat 2520.052 kb on + strand, within Dsui_2368at 2520.052 kb on + strand, within Dsui_2368at 2520.052 kb on + strand, within Dsui_2368at 2520.123 kb on + strand, within Dsui_2368at 2520.168 kb on - strandat 2520.220 kb on + strandat 2520.227 kb on + strandat 2520.388 kb on + strand, within Dsui_2369at 2520.393 kb on + strand, within Dsui_2369at 2520.629 kb on + strand, within Dsui_2369at 2520.639 kb on + strand, within Dsui_2369at 2520.673 kb on + strand, within Dsui_2369at 2520.673 kb on + strand, within Dsui_2369at 2520.721 kb on + strandat 2520.731 kb on + strandat 2520.731 kb on + strandat 2520.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,518,638 + -0.8
2,518,648 + -0.5
2,518,680 - +0.7
2,518,725 + Dsui_2367 0.13 -1.0
2,518,730 + Dsui_2367 0.14 -0.5
2,518,740 + Dsui_2367 0.15 +0.3
2,518,839 + Dsui_2367 0.28 -0.9
2,518,884 + Dsui_2367 0.34 -0.3
2,518,968 + Dsui_2367 0.44 -0.7
2,518,979 + Dsui_2367 0.46 +0.6
2,519,005 + Dsui_2367 0.49 -0.6
2,519,070 + Dsui_2367 0.57 -0.6
2,519,103 + Dsui_2367 0.62 -0.3
2,519,184 + Dsui_2367 0.72 +0.5
2,519,306 + Dsui_2367 0.88 +0.1
2,519,370 - +0.7
2,519,374 + -1.1
2,519,450 + -0.7
2,520,052 + Dsui_2368 0.79 -3.7
2,520,052 + Dsui_2368 0.79 -4.4
2,520,052 + Dsui_2368 0.79 -3.9
2,520,123 + Dsui_2368 0.88 -2.0
2,520,168 - -0.9
2,520,220 + -0.6
2,520,227 + +0.1
2,520,388 + Dsui_2369 0.24 -0.2
2,520,393 + Dsui_2369 0.25 -0.8
2,520,629 + Dsui_2369 0.75 -0.3
2,520,639 + Dsui_2369 0.77 -1.7
2,520,673 + Dsui_2369 0.84 +0.1
2,520,673 + Dsui_2369 0.84 -1.4
2,520,721 + -0.2
2,520,731 + -1.0
2,520,731 + -0.2
2,520,766 + -1.6

Or see this region's nucleotide sequence