Strain Fitness in Dechlorosoma suillum PS around Dsui_2305

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2303 and Dsui_2304 are separated by 29 nucleotidesDsui_2304 and Dsui_2305 overlap by 1 nucleotidesDsui_2305 and Dsui_2306 are separated by 200 nucleotidesDsui_2306 and Dsui_2307 are separated by 31 nucleotides Dsui_2303: Dsui_2303 - putative membrane protein, at 2,460,365 to 2,461,030 _2303 Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989 _2304 Dsui_2305: Dsui_2305 - electron transfer flavoprotein, beta subunit, at 2,461,989 to 2,462,738 _2305 Dsui_2306: Dsui_2306 - transcriptional regulator, at 2,462,939 to 2,463,523 _2306 Dsui_2307: Dsui_2307 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component, at 2,463,555 to 2,464,214 _2307 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2460.992 kb on + strandat 2461.000 kb on - strandat 2461.000 kb on - strandat 2461.005 kb on - strandat 2461.057 kb on + strandat 2461.177 kb on - strand, within Dsui_2304at 2461.384 kb on + strand, within Dsui_2304at 2461.454 kb on - strand, within Dsui_2304at 2461.503 kb on - strand, within Dsui_2304at 2461.561 kb on - strand, within Dsui_2304at 2461.588 kb on + strandat 2462.045 kb on + strandat 2462.061 kb on - strandat 2462.089 kb on - strand, within Dsui_2305at 2462.210 kb on - strand, within Dsui_2305at 2462.272 kb on - strand, within Dsui_2305at 2462.311 kb on - strand, within Dsui_2305at 2462.439 kb on - strand, within Dsui_2305at 2462.458 kb on - strand, within Dsui_2305at 2462.690 kb on + strandat 2462.747 kb on + strandat 2462.747 kb on + strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.788 kb on + strandat 2462.796 kb on - strandat 2462.806 kb on + strandat 2462.814 kb on - strandat 2462.814 kb on - strandat 2462.820 kb on + strandat 2462.828 kb on - strandat 2462.830 kb on + strandat 2462.838 kb on - strandat 2462.870 kb on - strandat 2463.108 kb on + strand, within Dsui_2306at 2463.116 kb on - strandat 2463.126 kb on - strandat 2463.126 kb on - strand, within Dsui_2306at 2463.138 kb on + strand, within Dsui_2306at 2463.227 kb on + strand, within Dsui_2306at 2463.340 kb on + strand, within Dsui_2306at 2463.405 kb on + strand, within Dsui_2306at 2463.413 kb on - strandat 2463.628 kb on - strand, within Dsui_2307at 2463.635 kb on + strand, within Dsui_2307at 2463.635 kb on + strand, within Dsui_2307at 2463.738 kb on - strand, within Dsui_2307

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,460,992 + -0.9
2,461,000 - -0.4
2,461,000 - -0.3
2,461,005 - +0.4
2,461,057 + -1.4
2,461,177 - Dsui_2304 0.13 -1.3
2,461,384 + Dsui_2304 0.35 -0.3
2,461,454 - Dsui_2304 0.42 -2.7
2,461,503 - Dsui_2304 0.48 -1.4
2,461,561 - Dsui_2304 0.54 +1.4
2,461,588 + -0.6
2,462,045 + -0.6
2,462,061 - -0.9
2,462,089 - Dsui_2305 0.13 -0.9
2,462,210 - Dsui_2305 0.29 -3.8
2,462,272 - Dsui_2305 0.38 -1.5
2,462,311 - Dsui_2305 0.43 -0.1
2,462,439 - Dsui_2305 0.60 -2.2
2,462,458 - Dsui_2305 0.63 -0.9
2,462,690 + -0.4
2,462,747 + -0.4
2,462,747 + +1.4
2,462,755 - +1.1
2,462,755 - +0.3
2,462,755 - +0.1
2,462,755 - +0.9
2,462,755 - +1.1
2,462,788 + -0.9
2,462,796 - -0.4
2,462,806 + +0.5
2,462,814 - -1.4
2,462,814 - -0.2
2,462,820 + +0.4
2,462,828 - +0.8
2,462,830 + -0.8
2,462,838 - -0.2
2,462,870 - -0.9
2,463,108 + Dsui_2306 0.29 -0.4
2,463,116 - -0.9
2,463,126 - -0.6
2,463,126 - Dsui_2306 0.32 -1.2
2,463,138 + Dsui_2306 0.34 -0.9
2,463,227 + Dsui_2306 0.49 -1.4
2,463,340 + Dsui_2306 0.69 -1.1
2,463,405 + Dsui_2306 0.80 -1.2
2,463,413 - -0.3
2,463,628 - Dsui_2307 0.11 +0.5
2,463,635 + Dsui_2307 0.12 -0.0
2,463,635 + Dsui_2307 0.12 -0.7
2,463,738 - Dsui_2307 0.28 +0.2

Or see this region's nucleotide sequence