Strain Fitness in Dechlorosoma suillum PS around Dsui_2259

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2257 and Dsui_2258 are separated by 135 nucleotidesDsui_2258 and Dsui_2259 are separated by 85 nucleotidesDsui_2259 and Dsui_2260 are separated by 348 nucleotides Dsui_2257: Dsui_2257 - transcriptional regulator, at 2,406,494 to 2,407,450 _2257 Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921 _2258 Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198 _2259 Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013 _2260 Position (kb) 2408 2409Strain fitness (log2 ratio) -1 0 1 2at 2407.208 kb on + strand, within Dsui_2257at 2407.284 kb on + strand, within Dsui_2257at 2407.292 kb on - strandat 2407.356 kb on + strandat 2407.455 kb on + strandat 2407.513 kb on - strandat 2407.580 kb on - strandat 2407.614 kb on - strandat 2407.627 kb on + strand, within Dsui_2258at 2407.982 kb on - strandat 2408.011 kb on - strandat 2408.059 kb on - strand, within Dsui_2259at 2408.157 kb on - strand, within Dsui_2259at 2408.191 kb on - strandat 2408.193 kb on - strandat 2408.590 kb on - strandat 2408.634 kb on + strandat 2408.639 kb on + strandat 2408.686 kb on - strandat 2408.766 kb on + strandat 2408.892 kb on - strandat 2408.939 kb on - strandat 2408.942 kb on + strandat 2408.996 kb on + strand, within Dsui_2260at 2408.999 kb on + strandat 2409.004 kb on - strand, within Dsui_2260at 2409.015 kb on - strand, within Dsui_2260at 2409.022 kb on + strandat 2409.025 kb on - strandat 2409.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,407,208 + Dsui_2257 0.75 +0.4
2,407,284 + Dsui_2257 0.83 -0.3
2,407,292 - +0.7
2,407,356 + +1.3
2,407,455 + +0.1
2,407,513 - +0.3
2,407,580 - +0.6
2,407,614 - +0.1
2,407,627 + Dsui_2258 0.12 +0.3
2,407,982 - +0.6
2,408,011 - +0.3
2,408,059 - Dsui_2259 0.27 -0.3
2,408,157 - Dsui_2259 0.78 -1.5
2,408,191 - -0.5
2,408,193 - -0.6
2,408,590 - +1.1
2,408,634 + -0.3
2,408,639 + +0.1
2,408,686 - +0.3
2,408,766 + +1.7
2,408,892 - +2.7
2,408,939 - +0.7
2,408,942 + +1.7
2,408,996 + Dsui_2260 0.31 -0.3
2,408,999 + -0.3
2,409,004 - Dsui_2260 0.31 +0.9
2,409,015 - Dsui_2260 0.32 +0.7
2,409,022 + +0.7
2,409,025 - +1.7
2,409,135 - -0.3

Or see this region's nucleotide sequence