Strain Fitness in Dechlorosoma suillum PS around Dsui_1754

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1753 and Dsui_1754 are separated by 15 nucleotidesDsui_1754 and Dsui_1755 are separated by 24 nucleotides Dsui_1753: Dsui_1753 - flagellar protein export ATPase FliI, at 1,839,183 to 1,840,598 _1753 Dsui_1754: Dsui_1754 - flagellar biosynthesis/type III secretory pathway protein, at 1,840,614 to 1,841,297 _1754 Dsui_1755: Dsui_1755 - flagellar motor switch protein FliG, at 1,841,322 to 1,842,323 _1755 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1839.760 kb on + strand, within Dsui_1753at 1839.938 kb on - strand, within Dsui_1753at 1839.973 kb on + strand, within Dsui_1753at 1840.026 kb on + strand, within Dsui_1753at 1840.178 kb on - strand, within Dsui_1753at 1840.211 kb on + strand, within Dsui_1753at 1840.232 kb on + strandat 1840.324 kb on + strand, within Dsui_1753at 1840.480 kb on + strandat 1840.520 kb on + strandat 1840.525 kb on - strandat 1840.582 kb on - strandat 1840.598 kb on + strandat 1840.601 kb on - strandat 1840.601 kb on - strandat 1840.601 kb on - strandat 1840.862 kb on + strand, within Dsui_1754at 1840.870 kb on - strand, within Dsui_1754at 1841.006 kb on + strandat 1841.029 kb on + strand, within Dsui_1754at 1841.089 kb on + strand, within Dsui_1754at 1841.095 kb on + strand, within Dsui_1754at 1841.139 kb on - strand, within Dsui_1754at 1841.169 kb on - strand, within Dsui_1754at 1841.227 kb on - strand, within Dsui_1754at 1841.243 kb on + strandat 1841.333 kb on - strandat 1841.389 kb on + strandat 1841.439 kb on + strand, within Dsui_1755at 1841.446 kb on + strand, within Dsui_1755at 1841.454 kb on - strand, within Dsui_1755at 1841.454 kb on - strand, within Dsui_1755at 1841.548 kb on - strand, within Dsui_1755at 1841.645 kb on - strand, within Dsui_1755at 1841.647 kb on - strand, within Dsui_1755at 1841.727 kb on + strand, within Dsui_1755at 1841.828 kb on + strand, within Dsui_1755at 1841.860 kb on + strand, within Dsui_1755at 1841.916 kb on - strand, within Dsui_1755at 1842.089 kb on + strand, within Dsui_1755at 1842.149 kb on + strand, within Dsui_1755at 1842.174 kb on - strand, within Dsui_1755at 1842.204 kb on - strand, within Dsui_1755at 1842.221 kb on + strand, within Dsui_1755at 1842.224 kb on + strandat 1842.291 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
1,839,760 + Dsui_1753 0.41 -1.2
1,839,938 - Dsui_1753 0.53 -0.3
1,839,973 + Dsui_1753 0.56 -1.5
1,840,026 + Dsui_1753 0.60 -0.5
1,840,178 - Dsui_1753 0.70 -1.2
1,840,211 + Dsui_1753 0.73 -0.2
1,840,232 + -0.6
1,840,324 + Dsui_1753 0.81 +0.5
1,840,480 + -0.7
1,840,520 + +0.4
1,840,525 - -1.3
1,840,582 - -0.8
1,840,598 + -1.8
1,840,601 - +0.0
1,840,601 - -0.2
1,840,601 - -0.5
1,840,862 + Dsui_1754 0.36 -1.0
1,840,870 - Dsui_1754 0.37 -4.0
1,841,006 + +2.2
1,841,029 + Dsui_1754 0.61 -1.2
1,841,089 + Dsui_1754 0.69 +0.3
1,841,095 + Dsui_1754 0.70 -0.6
1,841,139 - Dsui_1754 0.77 -1.7
1,841,169 - Dsui_1754 0.81 -1.0
1,841,227 - Dsui_1754 0.90 -1.7
1,841,243 + +0.4
1,841,333 - -0.2
1,841,389 + -0.5
1,841,439 + Dsui_1755 0.12 -0.4
1,841,446 + Dsui_1755 0.12 -0.2
1,841,454 - Dsui_1755 0.13 -2.1
1,841,454 - Dsui_1755 0.13 -0.6
1,841,548 - Dsui_1755 0.23 -1.2
1,841,645 - Dsui_1755 0.32 -1.9
1,841,647 - Dsui_1755 0.32 -2.4
1,841,727 + Dsui_1755 0.40 -2.3
1,841,828 + Dsui_1755 0.50 -0.0
1,841,860 + Dsui_1755 0.54 -1.8
1,841,916 - Dsui_1755 0.59 -1.6
1,842,089 + Dsui_1755 0.77 -1.8
1,842,149 + Dsui_1755 0.83 -0.8
1,842,174 - Dsui_1755 0.85 -0.7
1,842,204 - Dsui_1755 0.88 -1.8
1,842,221 + Dsui_1755 0.90 -1.1
1,842,224 + +0.8
1,842,291 + +0.3

Or see this region's nucleotide sequence