Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1742 and Dsui_1743 overlap by 1 nucleotides Dsui_1743 and Dsui_1744 are separated by 13 nucleotides Dsui_1744 and Dsui_1745 overlap by 4 nucleotides Dsui_1745 and Dsui_1746 overlap by 4 nucleotides
Dsui_1742: Dsui_1742 - flagellar hook-associated protein 3, at 1,831,612 to 1,832,580
_1742
Dsui_1743: Dsui_1743 - hypothetical protein, at 1,832,580 to 1,833,044
_1743
Dsui_1744: Dsui_1744 - flagellar biosynthetic protein FliR, at 1,833,058 to 1,833,843
_1744
Dsui_1745: Dsui_1745 - flagellar biosynthetic protein FliQ, at 1,833,840 to 1,834,109
_1745
Dsui_1746: Dsui_1746 - flagellar biosynthetic protein FliP, at 1,834,106 to 1,834,858
_1746
Position (kb)
1833
1834 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1832.067 kb on - strand, within Dsui_1742 at 1832.071 kb on + strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.218 kb on + strand, within Dsui_1742 at 1832.307 kb on - strand, within Dsui_1742 at 1832.311 kb on + strand, within Dsui_1742 at 1832.319 kb on - strand, within Dsui_1742 at 1832.344 kb on + strand, within Dsui_1742 at 1832.437 kb on + strand, within Dsui_1742 at 1832.472 kb on + strand, within Dsui_1742 at 1832.488 kb on - strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.549 kb on + strand at 1832.555 kb on + strand at 1832.555 kb on + strand at 1832.563 kb on - strand at 1832.563 kb on - strand at 1832.599 kb on - strand at 1832.602 kb on - strand at 1832.664 kb on - strand, within Dsui_1743 at 1832.675 kb on - strand, within Dsui_1743 at 1832.679 kb on + strand, within Dsui_1743 at 1832.682 kb on - strand, within Dsui_1743 at 1832.687 kb on - strand, within Dsui_1743 at 1832.813 kb on + strand, within Dsui_1743 at 1832.821 kb on - strand, within Dsui_1743 at 1832.875 kb on - strand, within Dsui_1743 at 1832.916 kb on - strand, within Dsui_1743 at 1833.007 kb on + strand at 1833.062 kb on + strand at 1833.083 kb on - strand at 1833.088 kb on - strand at 1833.134 kb on + strand at 1833.134 kb on + strand at 1833.134 kb on + strand at 1833.139 kb on + strand, within Dsui_1744 at 1833.142 kb on - strand, within Dsui_1744 at 1833.158 kb on - strand, within Dsui_1744 at 1833.165 kb on + strand, within Dsui_1744 at 1833.165 kb on + strand, within Dsui_1744 at 1833.173 kb on - strand, within Dsui_1744 at 1833.240 kb on + strand, within Dsui_1744 at 1833.285 kb on + strand, within Dsui_1744 at 1833.296 kb on + strand, within Dsui_1744 at 1833.306 kb on + strand, within Dsui_1744 at 1833.325 kb on - strand, within Dsui_1744 at 1833.339 kb on + strand at 1833.347 kb on - strand, within Dsui_1744 at 1833.383 kb on + strand, within Dsui_1744 at 1833.391 kb on - strand, within Dsui_1744 at 1833.444 kb on + strand, within Dsui_1744 at 1833.452 kb on - strand, within Dsui_1744 at 1833.583 kb on - strand, within Dsui_1744 at 1833.639 kb on - strand, within Dsui_1744 at 1833.646 kb on - strand, within Dsui_1744 at 1833.663 kb on + strand, within Dsui_1744 at 1833.827 kb on + strand at 1833.828 kb on + strand at 1833.897 kb on - strand, within Dsui_1745 at 1833.965 kb on + strand, within Dsui_1745 at 1834.037 kb on + strand, within Dsui_1745 at 1834.064 kb on + strand, within Dsui_1745 at 1834.160 kb on - strand at 1834.179 kb on - strand at 1834.345 kb on + strand, within Dsui_1746 at 1834.353 kb on - strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.726 kb on + strand, within Dsui_1746 at 1834.728 kb on + strand, within Dsui_1746 at 1834.734 kb on - strand, within Dsui_1746 at 1834.736 kb on - strand, within Dsui_1746 at 1834.785 kb on + strand at 1834.785 kb on + strand at 1834.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,832,067 - Dsui_1742 0.47 -1.5 1,832,071 + Dsui_1742 0.47 -1.0 1,832,123 - Dsui_1742 0.53 -0.6 1,832,123 - Dsui_1742 0.53 -1.5 1,832,213 + Dsui_1742 0.62 -0.0 1,832,213 + Dsui_1742 0.62 -0.1 1,832,213 + Dsui_1742 0.62 +0.3 1,832,213 + Dsui_1742 0.62 -0.4 1,832,213 + Dsui_1742 0.62 -0.6 1,832,213 + Dsui_1742 0.62 -0.2 1,832,218 + Dsui_1742 0.63 -0.2 1,832,307 - Dsui_1742 0.72 +0.3 1,832,311 + Dsui_1742 0.72 -0.8 1,832,319 - Dsui_1742 0.73 -1.1 1,832,344 + Dsui_1742 0.76 -0.9 1,832,437 + Dsui_1742 0.85 +0.2 1,832,472 + Dsui_1742 0.89 -0.7 1,832,488 - -1.3 1,832,517 + +0.2 1,832,517 + -1.3 1,832,517 + +0.3 1,832,517 + +0.5 1,832,525 - -0.5 1,832,525 - -0.8 1,832,525 - -0.9 1,832,549 + -6.2 1,832,555 + -0.8 1,832,555 + -1.0 1,832,563 - -1.0 1,832,563 - +0.2 1,832,599 - -0.6 1,832,602 - -0.0 1,832,664 - Dsui_1743 0.18 -0.5 1,832,675 - Dsui_1743 0.20 +0.0 1,832,679 + Dsui_1743 0.21 +0.4 1,832,682 - Dsui_1743 0.22 +0.2 1,832,687 - Dsui_1743 0.23 +1.0 1,832,813 + Dsui_1743 0.50 -0.6 1,832,821 - Dsui_1743 0.52 -1.3 1,832,875 - Dsui_1743 0.63 -0.4 1,832,916 - Dsui_1743 0.72 +0.6 1,833,007 + +0.2 1,833,062 + +1.1 1,833,083 - +0.9 1,833,088 - +0.7 1,833,134 + -1.7 1,833,134 + -2.0 1,833,134 + -1.7 1,833,139 + Dsui_1744 0.10 -2.0 1,833,142 - Dsui_1744 0.11 -4.3 1,833,158 - Dsui_1744 0.13 -0.9 1,833,165 + Dsui_1744 0.14 -1.7 1,833,165 + Dsui_1744 0.14 -1.9 1,833,173 - Dsui_1744 0.15 -1.2 1,833,240 + Dsui_1744 0.23 -0.8 1,833,285 + Dsui_1744 0.29 -1.5 1,833,296 + Dsui_1744 0.30 -0.4 1,833,306 + Dsui_1744 0.32 -1.4 1,833,325 - Dsui_1744 0.34 -0.4 1,833,339 + +0.2 1,833,347 - Dsui_1744 0.37 -0.8 1,833,383 + Dsui_1744 0.41 -0.5 1,833,391 - Dsui_1744 0.42 -1.1 1,833,444 + Dsui_1744 0.49 -2.9 1,833,452 - Dsui_1744 0.50 -0.6 1,833,583 - Dsui_1744 0.67 -0.9 1,833,639 - Dsui_1744 0.74 -1.7 1,833,646 - Dsui_1744 0.75 +0.3 1,833,663 + Dsui_1744 0.77 -0.1 1,833,827 + -2.3 1,833,828 + -0.1 1,833,897 - Dsui_1745 0.21 -1.0 1,833,965 + Dsui_1745 0.46 +0.8 1,834,037 + Dsui_1745 0.73 -1.1 1,834,064 + Dsui_1745 0.83 -0.9 1,834,160 - -1.0 1,834,179 - -0.0 1,834,345 + Dsui_1746 0.32 -1.0 1,834,353 - Dsui_1746 0.33 -1.1 1,834,515 + Dsui_1746 0.54 -2.8 1,834,515 + Dsui_1746 0.54 -0.6 1,834,515 + Dsui_1746 0.54 -1.5 1,834,523 - Dsui_1746 0.55 -1.1 1,834,523 - Dsui_1746 0.55 -1.2 1,834,523 - Dsui_1746 0.55 -1.3 1,834,726 + Dsui_1746 0.82 -0.8 1,834,728 + Dsui_1746 0.83 -2.2 1,834,734 - Dsui_1746 0.83 -0.3 1,834,736 - Dsui_1746 0.84 -0.6 1,834,785 + -1.4 1,834,785 + -1.0 1,834,789 + -1.1
Or see this region's nucleotide sequence