Strain Fitness in Dechlorosoma suillum PS around Dsui_1721

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1719 and Dsui_1720 are separated by 3 nucleotidesDsui_1720 and Dsui_1721 are separated by 12 nucleotidesDsui_1721 and Dsui_1722 are separated by 178 nucleotides Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344 _1719 Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214 _1720 Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116 _1721 Dsui_1722: Dsui_1722 - flagellar biosynthetic protein FlhB, at 1,812,295 to 1,813,434 _1722 Position (kb) 1810 1811 1812 1813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1809.249 kb on + strand, within Dsui_1719at 1809.249 kb on + strand, within Dsui_1719at 1809.257 kb on - strand, within Dsui_1719at 1809.299 kb on - strand, within Dsui_1719at 1809.345 kb on + strandat 1809.353 kb on - strandat 1809.395 kb on + strandat 1809.517 kb on + strand, within Dsui_1720at 1809.587 kb on + strand, within Dsui_1720at 1809.650 kb on - strand, within Dsui_1720at 1809.710 kb on - strand, within Dsui_1720at 1809.865 kb on - strand, within Dsui_1720at 1809.936 kb on + strand, within Dsui_1720at 1809.992 kb on - strand, within Dsui_1720at 1810.062 kb on + strand, within Dsui_1720at 1810.191 kb on + strandat 1810.275 kb on - strandat 1810.328 kb on + strandat 1810.475 kb on - strand, within Dsui_1721at 1810.483 kb on + strand, within Dsui_1721at 1810.486 kb on - strand, within Dsui_1721at 1810.491 kb on - strand, within Dsui_1721at 1810.491 kb on - strand, within Dsui_1721at 1810.562 kb on + strand, within Dsui_1721at 1810.562 kb on + strand, within Dsui_1721at 1810.562 kb on + strand, within Dsui_1721at 1810.570 kb on - strand, within Dsui_1721at 1810.818 kb on + strand, within Dsui_1721at 1811.080 kb on - strandat 1811.099 kb on + strand, within Dsui_1721at 1811.196 kb on + strand, within Dsui_1721at 1811.261 kb on - strand, within Dsui_1721at 1811.298 kb on - strandat 1811.429 kb on + strand, within Dsui_1721at 1811.437 kb on - strand, within Dsui_1721at 1811.494 kb on + strand, within Dsui_1721at 1811.554 kb on + strand, within Dsui_1721at 1811.568 kb on - strand, within Dsui_1721at 1811.574 kb on - strand, within Dsui_1721at 1811.662 kb on + strand, within Dsui_1721at 1811.721 kb on - strand, within Dsui_1721at 1811.834 kb on + strand, within Dsui_1721at 1811.849 kb on - strand, within Dsui_1721at 1811.905 kb on + strand, within Dsui_1721at 1811.913 kb on - strand, within Dsui_1721at 1811.913 kb on - strand, within Dsui_1721at 1812.020 kb on - strandat 1812.055 kb on - strandat 1812.129 kb on + strandat 1812.291 kb on + strandat 1812.349 kb on + strandat 1812.438 kb on - strand, within Dsui_1722at 1812.461 kb on + strand, within Dsui_1722at 1812.500 kb on + strand, within Dsui_1722at 1812.596 kb on + strand, within Dsui_1722at 1812.625 kb on - strand, within Dsui_1722at 1812.664 kb on + strand, within Dsui_1722at 1812.664 kb on + strand, within Dsui_1722at 1812.674 kb on + strand, within Dsui_1722at 1812.723 kb on + strand, within Dsui_1722at 1812.732 kb on + strand, within Dsui_1722at 1812.740 kb on - strand, within Dsui_1722at 1812.767 kb on - strand, within Dsui_1722at 1812.779 kb on + strand, within Dsui_1722at 1812.796 kb on - strand, within Dsui_1722at 1812.843 kb on + strand, within Dsui_1722at 1812.851 kb on - strand, within Dsui_1722at 1812.950 kb on + strand, within Dsui_1722at 1813.019 kb on - strand, within Dsui_1722at 1813.082 kb on - strand, within Dsui_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,809,249 + Dsui_1719 0.76 -0.6
1,809,249 + Dsui_1719 0.76 +0.3
1,809,257 - Dsui_1719 0.78 -0.5
1,809,299 - Dsui_1719 0.88 +0.1
1,809,345 + +0.6
1,809,353 - -0.2
1,809,395 + -0.3
1,809,517 + Dsui_1720 0.19 -0.7
1,809,587 + Dsui_1720 0.28 -0.2
1,809,650 - Dsui_1720 0.35 -0.5
1,809,710 - Dsui_1720 0.42 -0.2
1,809,865 - Dsui_1720 0.60 -0.3
1,809,936 + Dsui_1720 0.68 -1.0
1,809,992 - Dsui_1720 0.74 -0.6
1,810,062 + Dsui_1720 0.82 +0.3
1,810,191 + +0.8
1,810,275 - +0.2
1,810,328 + +1.3
1,810,475 - Dsui_1721 0.13 +0.1
1,810,483 + Dsui_1721 0.14 -0.1
1,810,486 - Dsui_1721 0.14 +0.2
1,810,491 - Dsui_1721 0.14 -0.2
1,810,491 - Dsui_1721 0.14 +0.5
1,810,562 + Dsui_1721 0.18 +0.7
1,810,562 + Dsui_1721 0.18 -1.5
1,810,562 + Dsui_1721 0.18 -0.9
1,810,570 - Dsui_1721 0.18 -0.8
1,810,818 + Dsui_1721 0.31 +0.4
1,811,080 - +0.2
1,811,099 + Dsui_1721 0.46 -0.9
1,811,196 + Dsui_1721 0.51 +0.3
1,811,261 - Dsui_1721 0.55 +0.3
1,811,298 - +0.8
1,811,429 + Dsui_1721 0.64 -0.9
1,811,437 - Dsui_1721 0.64 +1.8
1,811,494 + Dsui_1721 0.67 -0.7
1,811,554 + Dsui_1721 0.70 -0.6
1,811,568 - Dsui_1721 0.71 +0.3
1,811,574 - Dsui_1721 0.71 +0.1
1,811,662 + Dsui_1721 0.76 -0.2
1,811,721 - Dsui_1721 0.79 -0.7
1,811,834 + Dsui_1721 0.85 -0.7
1,811,849 - Dsui_1721 0.86 -0.4
1,811,905 + Dsui_1721 0.89 -1.3
1,811,913 - Dsui_1721 0.89 -1.4
1,811,913 - Dsui_1721 0.89 -0.6
1,812,020 - +0.6
1,812,055 - -1.7
1,812,129 + -0.2
1,812,291 + +1.6
1,812,349 + -1.0
1,812,438 - Dsui_1722 0.13 +1.6
1,812,461 + Dsui_1722 0.15 -0.5
1,812,500 + Dsui_1722 0.18 -0.9
1,812,596 + Dsui_1722 0.26 -0.8
1,812,625 - Dsui_1722 0.29 -2.9
1,812,664 + Dsui_1722 0.32 -0.5
1,812,664 + Dsui_1722 0.32 -0.1
1,812,674 + Dsui_1722 0.33 +0.3
1,812,723 + Dsui_1722 0.38 -0.2
1,812,732 + Dsui_1722 0.38 -1.1
1,812,740 - Dsui_1722 0.39 -1.0
1,812,767 - Dsui_1722 0.41 -0.5
1,812,779 + Dsui_1722 0.42 -0.2
1,812,796 - Dsui_1722 0.44 -0.6
1,812,843 + Dsui_1722 0.48 -0.7
1,812,851 - Dsui_1722 0.49 +0.8
1,812,950 + Dsui_1722 0.57 -0.6
1,813,019 - Dsui_1722 0.64 -0.1
1,813,082 - Dsui_1722 0.69 -0.3

Or see this region's nucleotide sequence