Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1674 and Dsui_1675 are separated by 4 nucleotides Dsui_1675 and Dsui_1676 are separated by 79 nucleotides Dsui_1676 and Dsui_1677 are separated by 50 nucleotides Dsui_1677 and Dsui_1678 are separated by 24 nucleotides Dsui_1678 and Dsui_1679 are separated by 1 nucleotides
Dsui_1674: Dsui_1674 - EAL domain-containing protein, at 1,761,002 to 1,761,721
_1674
Dsui_1675: Dsui_1675 - hypothetical protein, at 1,761,726 to 1,762,052
_1675
Dsui_1676: Dsui_1676 - biopolymer transport protein, at 1,762,132 to 1,762,623
_1676
Dsui_1677: Dsui_1677 - ribosomal protein S4, bacterial/organelle type, at 1,762,674 to 1,763,291
_1677
Dsui_1678: Dsui_1678 - hypothetical protein, at 1,763,316 to 1,763,588
_1678
Dsui_1679: Dsui_1679 - Mg chelatase, cobalamin biosynthesis protein CobN, at 1,763,590 to 1,767,693
_1679
Position (kb)
1762
1763 Strain fitness (log2 ratio)
-1
0
1
2 at 1761.147 kb on + strand, within Dsui_1674 at 1761.163 kb on - strand at 1761.195 kb on + strand at 1761.204 kb on - strand, within Dsui_1674 at 1761.400 kb on + strand at 1761.478 kb on - strand, within Dsui_1674 at 1761.525 kb on + strand, within Dsui_1674 at 1761.608 kb on - strand, within Dsui_1674 at 1761.716 kb on - strand at 1761.747 kb on + strand at 1761.774 kb on - strand at 1761.807 kb on - strand at 1761.874 kb on - strand, within Dsui_1675 at 1761.885 kb on - strand, within Dsui_1675 at 1761.924 kb on - strand, within Dsui_1675 at 1761.932 kb on + strand, within Dsui_1675 at 1762.048 kb on - strand at 1762.089 kb on + strand at 1762.110 kb on + strand at 1762.129 kb on + strand at 1762.164 kb on - strand at 1762.257 kb on - strand, within Dsui_1676 at 1762.268 kb on + strand at 1762.401 kb on + strand at 1762.409 kb on - strand, within Dsui_1676 at 1762.416 kb on + strand, within Dsui_1676 at 1762.417 kb on - strand, within Dsui_1676 at 1762.424 kb on - strand, within Dsui_1676 at 1762.524 kb on + strand, within Dsui_1676 at 1762.524 kb on + strand at 1762.532 kb on - strand, within Dsui_1676 at 1762.557 kb on + strand at 1762.560 kb on - strand, within Dsui_1676 at 1762.565 kb on - strand, within Dsui_1676 at 1762.589 kb on + strand at 1762.705 kb on - strand at 1762.721 kb on - strand at 1762.836 kb on + strand, within Dsui_1677 at 1763.031 kb on + strand, within Dsui_1677 at 1763.294 kb on - strand at 1763.307 kb on + strand at 1763.327 kb on - strand at 1763.422 kb on + strand at 1763.540 kb on - strand, within Dsui_1678 at 1763.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,761,147 + Dsui_1674 0.20 +0.3 1,761,163 - +1.8 1,761,195 + +0.2 1,761,204 - Dsui_1674 0.28 +0.6 1,761,400 + +0.8 1,761,478 - Dsui_1674 0.66 +0.6 1,761,525 + Dsui_1674 0.73 -0.6 1,761,608 - Dsui_1674 0.84 -0.8 1,761,716 - +0.8 1,761,747 + -0.2 1,761,774 - +1.8 1,761,807 - -0.6 1,761,874 - Dsui_1675 0.45 +0.1 1,761,885 - Dsui_1675 0.49 +0.1 1,761,924 - Dsui_1675 0.61 +0.9 1,761,932 + Dsui_1675 0.63 -1.4 1,762,048 - +0.2 1,762,089 + +2.2 1,762,110 + -0.8 1,762,129 + +0.8 1,762,164 - -0.8 1,762,257 - Dsui_1676 0.25 +0.0 1,762,268 + +0.5 1,762,401 + +0.2 1,762,409 - Dsui_1676 0.56 -0.9 1,762,416 + Dsui_1676 0.58 +1.1 1,762,417 - Dsui_1676 0.58 +0.9 1,762,424 - Dsui_1676 0.59 +0.4 1,762,524 + Dsui_1676 0.80 +1.0 1,762,524 + +1.8 1,762,532 - Dsui_1676 0.81 +0.4 1,762,557 + -0.6 1,762,560 - Dsui_1676 0.87 -0.3 1,762,565 - Dsui_1676 0.88 -0.6 1,762,589 + +0.8 1,762,705 - +0.4 1,762,721 - -0.2 1,762,836 + Dsui_1677 0.26 -0.4 1,763,031 + Dsui_1677 0.58 -0.4 1,763,294 - +1.2 1,763,307 + -0.1 1,763,327 - +0.2 1,763,422 + +0.8 1,763,540 - Dsui_1678 0.82 -0.4 1,763,596 - +0.3
Or see this region's nucleotide sequence