Strain Fitness in Dechlorosoma suillum PS around Dsui_1584

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1583 and Dsui_1584 are separated by 14 nucleotidesDsui_1584 and Dsui_1585 are separated by 122 nucleotides Dsui_1583: Dsui_1583 - (4Fe-4S) cluster-containing protein, at 1,660,885 to 1,662,297 _1583 Dsui_1584: Dsui_1584 - hypothetical protein, at 1,662,312 to 1,662,965 _1584 Dsui_1585: Dsui_1585 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,663,088 to 1,664,110 _1585 Position (kb) 1662 1663Strain fitness (log2 ratio) -2 -1 0 1at 1661.385 kb on + strand, within Dsui_1583at 1661.393 kb on - strand, within Dsui_1583at 1661.406 kb on + strand, within Dsui_1583at 1661.470 kb on - strandat 1661.708 kb on - strand, within Dsui_1583at 1661.851 kb on + strand, within Dsui_1583at 1661.911 kb on + strand, within Dsui_1583at 1661.913 kb on - strand, within Dsui_1583at 1661.919 kb on - strandat 1661.945 kb on + strand, within Dsui_1583at 1661.953 kb on - strand, within Dsui_1583at 1662.015 kb on + strand, within Dsui_1583at 1662.205 kb on - strandat 1662.231 kb on + strandat 1662.250 kb on + strandat 1662.275 kb on - strandat 1662.296 kb on + strandat 1662.304 kb on - strandat 1662.489 kb on + strand, within Dsui_1584at 1662.797 kb on + strand, within Dsui_1584at 1662.820 kb on + strand, within Dsui_1584

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,661,385 + Dsui_1583 0.35 -0.5
1,661,393 - Dsui_1583 0.36 -0.4
1,661,406 + Dsui_1583 0.37 -1.1
1,661,470 - -0.6
1,661,708 - Dsui_1583 0.58 -2.0
1,661,851 + Dsui_1583 0.68 -0.3
1,661,911 + Dsui_1583 0.73 -0.7
1,661,913 - Dsui_1583 0.73 -0.5
1,661,919 - -0.3
1,661,945 + Dsui_1583 0.75 +0.2
1,661,953 - Dsui_1583 0.76 -0.9
1,662,015 + Dsui_1583 0.80 -0.4
1,662,205 - +0.0
1,662,231 + -0.4
1,662,250 + +0.0
1,662,275 - -0.7
1,662,296 + -1.4
1,662,304 - -0.1
1,662,489 + Dsui_1584 0.27 -0.8
1,662,797 + Dsui_1584 0.74 -0.3
1,662,820 + Dsui_1584 0.78 -1.3

Or see this region's nucleotide sequence