Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1580 and Dsui_1581 are separated by 4 nucleotides Dsui_1581 and Dsui_1582 are separated by 186 nucleotides Dsui_1582 and Dsui_1583 are separated by 65 nucleotides
Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249
_1580
Dsui_1581: Dsui_1581 - response regulator, at 1,659,254 to 1,659,904
_1581
Dsui_1582: Dsui_1582 - Fe-S oxidoreductase, at 1,660,091 to 1,660,819
_1582
Dsui_1583: Dsui_1583 - (4Fe-4S) cluster-containing protein, at 1,660,885 to 1,662,297
_1583
Position (kb)
1660
1661 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1659.113 kb on - strand at 1659.229 kb on + strand at 1659.263 kb on + strand at 1659.268 kb on - strand at 1659.291 kb on + strand at 1659.401 kb on - strand at 1659.590 kb on - strand, within Dsui_1581 at 1659.602 kb on + strand, within Dsui_1581 at 1659.610 kb on - strand at 1659.804 kb on + strand, within Dsui_1581 at 1659.873 kb on - strand at 1659.907 kb on + strand at 1659.907 kb on - strand at 1660.143 kb on - strand at 1660.261 kb on - strand, within Dsui_1582 at 1660.261 kb on - strand, within Dsui_1582 at 1660.300 kb on - strand, within Dsui_1582 at 1660.312 kb on + strand, within Dsui_1582 at 1660.339 kb on - strand, within Dsui_1582 at 1660.358 kb on - strand, within Dsui_1582 at 1660.371 kb on + strand, within Dsui_1582 at 1660.379 kb on - strand, within Dsui_1582 at 1660.421 kb on - strand, within Dsui_1582 at 1660.421 kb on - strand, within Dsui_1582 at 1660.428 kb on + strand, within Dsui_1582 at 1660.450 kb on + strand, within Dsui_1582 at 1660.511 kb on - strand, within Dsui_1582 at 1660.592 kb on + strand, within Dsui_1582 at 1660.615 kb on - strand, within Dsui_1582 at 1660.650 kb on - strand, within Dsui_1582 at 1660.791 kb on - strand at 1660.835 kb on + strand at 1660.905 kb on + strand at 1660.937 kb on + strand at 1660.945 kb on - strand at 1660.963 kb on - strand at 1661.101 kb on - strand, within Dsui_1583 at 1661.120 kb on + strand, within Dsui_1583 at 1661.184 kb on + strand, within Dsui_1583 at 1661.187 kb on - strand, within Dsui_1583 at 1661.192 kb on - strand, within Dsui_1583 at 1661.216 kb on + strand, within Dsui_1583 at 1661.224 kb on - strand, within Dsui_1583 at 1661.224 kb on - strand, within Dsui_1583 at 1661.385 kb on + strand, within Dsui_1583 at 1661.393 kb on - strand, within Dsui_1583 at 1661.406 kb on + strand, within Dsui_1583 at 1661.470 kb on - strand at 1661.708 kb on - strand, within Dsui_1583
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,659,113 - +0.3 1,659,229 + +0.0 1,659,263 + +2.5 1,659,268 - -3.9 1,659,291 + -1.9 1,659,401 - +0.1 1,659,590 - Dsui_1581 0.52 -3.9 1,659,602 + Dsui_1581 0.53 -3.6 1,659,610 - +0.7 1,659,804 + Dsui_1581 0.84 -2.5 1,659,873 - +1.4 1,659,907 + +0.0 1,659,907 - -0.0 1,660,143 - -0.1 1,660,261 - Dsui_1582 0.23 -1.1 1,660,261 - Dsui_1582 0.23 -2.2 1,660,300 - Dsui_1582 0.29 -1.2 1,660,312 + Dsui_1582 0.30 -0.3 1,660,339 - Dsui_1582 0.34 -0.8 1,660,358 - Dsui_1582 0.37 -1.6 1,660,371 + Dsui_1582 0.38 -0.4 1,660,379 - Dsui_1582 0.40 -0.9 1,660,421 - Dsui_1582 0.45 -0.7 1,660,421 - Dsui_1582 0.45 -1.4 1,660,428 + Dsui_1582 0.46 -1.1 1,660,450 + Dsui_1582 0.49 -1.9 1,660,511 - Dsui_1582 0.58 -0.7 1,660,592 + Dsui_1582 0.69 -1.2 1,660,615 - Dsui_1582 0.72 -0.7 1,660,650 - Dsui_1582 0.77 -0.8 1,660,791 - -0.0 1,660,835 + -0.7 1,660,905 + -0.8 1,660,937 + -0.7 1,660,945 - +0.2 1,660,963 - -0.9 1,661,101 - Dsui_1583 0.15 -0.7 1,661,120 + Dsui_1583 0.17 -0.6 1,661,184 + Dsui_1583 0.21 -0.4 1,661,187 - Dsui_1583 0.21 -0.2 1,661,192 - Dsui_1583 0.22 -1.4 1,661,216 + Dsui_1583 0.23 +1.3 1,661,224 - Dsui_1583 0.24 -0.8 1,661,224 - Dsui_1583 0.24 -1.5 1,661,385 + Dsui_1583 0.35 -0.5 1,661,393 - Dsui_1583 0.36 -0.4 1,661,406 + Dsui_1583 0.37 -1.1 1,661,470 - -0.6 1,661,708 - Dsui_1583 0.58 -2.0
Or see this region's nucleotide sequence