Strain Fitness in Dechlorosoma suillum PS around Dsui_1497

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1496 and Dsui_1497 are separated by 102 nucleotidesDsui_1497 and Dsui_1498 are separated by 96 nucleotidesDsui_1498 and Dsui_1499 are separated by 79 nucleotides Dsui_1496: Dsui_1496 - YfdX protein, at 1,560,294 to 1,561,208 _1496 Dsui_1497: Dsui_1497 - YfdX protein, at 1,561,311 to 1,562,198 _1497 Dsui_1498: Dsui_1498 - hypothetical protein, at 1,562,295 to 1,562,906 _1498 Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131 _1499 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -3 -2 -1 0 1at 1560.326 kb on - strandat 1560.366 kb on + strandat 1560.366 kb on + strandat 1560.374 kb on - strandat 1560.374 kb on - strandat 1560.374 kb on - strandat 1560.420 kb on - strand, within Dsui_1496at 1560.557 kb on + strand, within Dsui_1496at 1560.657 kb on - strand, within Dsui_1496at 1560.657 kb on - strand, within Dsui_1496at 1560.691 kb on - strand, within Dsui_1496at 1560.728 kb on + strand, within Dsui_1496at 1560.889 kb on - strand, within Dsui_1496at 1560.911 kb on + strand, within Dsui_1496at 1560.915 kb on - strand, within Dsui_1496at 1561.020 kb on + strand, within Dsui_1496at 1561.022 kb on + strand, within Dsui_1496at 1561.022 kb on + strand, within Dsui_1496at 1561.022 kb on + strand, within Dsui_1496at 1561.030 kb on - strand, within Dsui_1496at 1561.061 kb on - strand, within Dsui_1496at 1561.070 kb on + strand, within Dsui_1496at 1561.078 kb on - strand, within Dsui_1496at 1561.078 kb on - strand, within Dsui_1496at 1561.091 kb on + strand, within Dsui_1496at 1561.126 kb on - strandat 1561.168 kb on + strandat 1561.241 kb on + strandat 1561.390 kb on + strandat 1561.402 kb on + strand, within Dsui_1497at 1561.403 kb on + strand, within Dsui_1497at 1561.405 kb on - strand, within Dsui_1497at 1561.410 kb on - strand, within Dsui_1497at 1561.411 kb on - strand, within Dsui_1497at 1561.429 kb on - strand, within Dsui_1497at 1561.556 kb on + strand, within Dsui_1497at 1561.562 kb on + strand, within Dsui_1497at 1561.596 kb on - strand, within Dsui_1497at 1561.618 kb on + strand, within Dsui_1497at 1561.633 kb on + strand, within Dsui_1497at 1561.656 kb on - strand, within Dsui_1497at 1561.722 kb on - strand, within Dsui_1497at 1561.855 kb on + strand, within Dsui_1497at 1562.030 kb on - strand, within Dsui_1497at 1562.053 kb on + strand, within Dsui_1497at 1562.069 kb on - strand, within Dsui_1497at 1562.096 kb on + strand, within Dsui_1497at 1562.109 kb on - strand, within Dsui_1497at 1562.173 kb on + strandat 1562.201 kb on + strandat 1562.219 kb on - strandat 1562.219 kb on - strandat 1562.219 kb on - strandat 1562.219 kb on - strandat 1562.245 kb on + strandat 1562.245 kb on + strandat 1562.247 kb on - strandat 1562.253 kb on - strandat 1562.253 kb on - strandat 1562.331 kb on - strandat 1562.336 kb on + strandat 1562.336 kb on + strandat 1562.336 kb on + strandat 1562.338 kb on + strandat 1562.384 kb on + strand, within Dsui_1498at 1562.448 kb on + strand, within Dsui_1498at 1562.448 kb on + strand, within Dsui_1498at 1562.455 kb on + strand, within Dsui_1498at 1562.455 kb on - strand, within Dsui_1498at 1562.456 kb on - strand, within Dsui_1498at 1562.463 kb on - strand, within Dsui_1498at 1562.463 kb on - strand, within Dsui_1498at 1562.488 kb on - strand, within Dsui_1498at 1562.511 kb on - strand, within Dsui_1498at 1562.573 kb on + strand, within Dsui_1498at 1562.579 kb on - strand, within Dsui_1498at 1562.618 kb on + strand, within Dsui_1498at 1562.632 kb on + strand, within Dsui_1498at 1562.692 kb on + strand, within Dsui_1498at 1562.711 kb on + strand, within Dsui_1498at 1562.723 kb on + strand, within Dsui_1498at 1562.737 kb on + strand, within Dsui_1498at 1562.741 kb on - strand, within Dsui_1498at 1562.755 kb on - strand, within Dsui_1498at 1562.828 kb on + strand, within Dsui_1498at 1562.828 kb on - strand, within Dsui_1498at 1562.901 kb on + strandat 1562.901 kb on + strandat 1562.901 kb on + strandat 1562.901 kb on + strandat 1562.909 kb on - strandat 1562.909 kb on - strandat 1562.909 kb on - strandat 1562.910 kb on - strandat 1563.032 kb on + strandat 1563.046 kb on + strandat 1563.071 kb on + strandat 1563.072 kb on + strandat 1563.079 kb on - strandat 1563.079 kb on - strandat 1563.122 kb on - strand, within Dsui_1499at 1563.135 kb on + strand, within Dsui_1499at 1563.159 kb on + strand, within Dsui_1499at 1563.162 kb on - strand, within Dsui_1499at 1563.167 kb on + strand, within Dsui_1499at 1563.170 kb on + strand, within Dsui_1499at 1563.170 kb on + strand, within Dsui_1499

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,560,326 - -0.4
1,560,366 + -0.1
1,560,366 + -0.2
1,560,374 - +0.1
1,560,374 - -0.8
1,560,374 - -0.1
1,560,420 - Dsui_1496 0.14 -2.3
1,560,557 + Dsui_1496 0.29 +1.0
1,560,657 - Dsui_1496 0.40 -1.3
1,560,657 - Dsui_1496 0.40 -0.8
1,560,691 - Dsui_1496 0.43 +0.0
1,560,728 + Dsui_1496 0.47 -0.4
1,560,889 - Dsui_1496 0.65 -0.5
1,560,911 + Dsui_1496 0.67 +0.1
1,560,915 - Dsui_1496 0.68 -1.5
1,561,020 + Dsui_1496 0.79 -1.0
1,561,022 + Dsui_1496 0.80 -0.4
1,561,022 + Dsui_1496 0.80 +0.3
1,561,022 + Dsui_1496 0.80 -0.1
1,561,030 - Dsui_1496 0.80 -0.0
1,561,061 - Dsui_1496 0.84 -0.9
1,561,070 + Dsui_1496 0.85 +0.8
1,561,078 - Dsui_1496 0.86 -0.8
1,561,078 - Dsui_1496 0.86 -0.1
1,561,091 + Dsui_1496 0.87 +0.4
1,561,126 - -0.9
1,561,168 + -0.0
1,561,241 + -0.3
1,561,390 + -0.3
1,561,402 + Dsui_1497 0.10 -0.2
1,561,403 + Dsui_1497 0.10 +0.2
1,561,405 - Dsui_1497 0.11 -0.3
1,561,410 - Dsui_1497 0.11 -0.1
1,561,411 - Dsui_1497 0.11 -0.3
1,561,429 - Dsui_1497 0.13 -0.8
1,561,556 + Dsui_1497 0.28 -0.1
1,561,562 + Dsui_1497 0.28 -0.9
1,561,596 - Dsui_1497 0.32 -0.5
1,561,618 + Dsui_1497 0.35 -0.6
1,561,633 + Dsui_1497 0.36 -0.2
1,561,656 - Dsui_1497 0.39 -0.7
1,561,722 - Dsui_1497 0.46 -0.7
1,561,855 + Dsui_1497 0.61 -0.1
1,562,030 - Dsui_1497 0.81 -0.4
1,562,053 + Dsui_1497 0.84 -0.3
1,562,069 - Dsui_1497 0.85 -0.5
1,562,096 + Dsui_1497 0.88 -0.6
1,562,109 - Dsui_1497 0.90 -0.6
1,562,173 + -0.1
1,562,201 + -1.0
1,562,219 - -1.1
1,562,219 - +1.0
1,562,219 - -0.0
1,562,219 - -0.4
1,562,245 + -0.2
1,562,245 + +0.0
1,562,247 - -0.4
1,562,253 - -0.7
1,562,253 - -1.0
1,562,331 - -0.3
1,562,336 + -0.7
1,562,336 + +0.3
1,562,336 + -0.3
1,562,338 + +0.0
1,562,384 + Dsui_1498 0.15 +0.1
1,562,448 + Dsui_1498 0.25 -0.3
1,562,448 + Dsui_1498 0.25 -0.0
1,562,455 + Dsui_1498 0.26 -0.8
1,562,455 - Dsui_1498 0.26 +0.0
1,562,456 - Dsui_1498 0.26 -0.2
1,562,463 - Dsui_1498 0.27 +0.3
1,562,463 - Dsui_1498 0.27 -0.7
1,562,488 - Dsui_1498 0.32 -0.6
1,562,511 - Dsui_1498 0.35 -0.5
1,562,573 + Dsui_1498 0.45 -0.3
1,562,579 - Dsui_1498 0.46 +1.3
1,562,618 + Dsui_1498 0.53 +0.0
1,562,632 + Dsui_1498 0.55 -0.1
1,562,692 + Dsui_1498 0.65 -0.3
1,562,711 + Dsui_1498 0.68 +0.3
1,562,723 + Dsui_1498 0.70 -0.1
1,562,737 + Dsui_1498 0.72 -0.3
1,562,741 - Dsui_1498 0.73 -0.0
1,562,755 - Dsui_1498 0.75 -0.3
1,562,828 + Dsui_1498 0.87 -0.4
1,562,828 - Dsui_1498 0.87 +0.5
1,562,901 + +0.8
1,562,901 + -0.2
1,562,901 + +0.1
1,562,901 + -0.3
1,562,909 - +0.3
1,562,909 - +0.5
1,562,909 - -0.3
1,562,910 - +0.5
1,563,032 + +0.2
1,563,046 + -0.7
1,563,071 + +0.3
1,563,072 + -0.1
1,563,079 - -0.8
1,563,079 - -0.3
1,563,122 - Dsui_1499 0.12 -2.8
1,563,135 + Dsui_1499 0.13 +0.0
1,563,159 + Dsui_1499 0.15 -0.9
1,563,162 - Dsui_1499 0.15 -2.0
1,563,167 + Dsui_1499 0.16 -0.3
1,563,170 + Dsui_1499 0.16 +0.3
1,563,170 + Dsui_1499 0.16 -0.3

Or see this region's nucleotide sequence