Strain Fitness in Dechlorosoma suillum PS around Dsui_1330

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1328 and Dsui_1329 are separated by 37 nucleotidesDsui_1329 and Dsui_1330 are separated by 500 nucleotidesDsui_1330 and Dsui_1331 are separated by 9 nucleotidesDsui_1331 and Dsui_1332 are separated by 182 nucleotides Dsui_1328: Dsui_1328 - ubiquinone biosynthesis protein COQ7, at 1,387,370 to 1,387,993 _1328 Dsui_1329: Dsui_1329 - putative redox protein, regulator of disulfide bond formation, at 1,388,031 to 1,388,447 _1329 Dsui_1330: Dsui_1330 - ribosomal protein L13, bacterial type, at 1,388,948 to 1,389,376 _1330 Dsui_1331: Dsui_1331 - ribosomal protein S9, at 1,389,386 to 1,389,778 _1331 Dsui_1332: Dsui_1332 - hypothetical protein, at 1,389,961 to 1,390,722 _1332 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -3 -2 -1 0 1at 1388.002 kb on - strandat 1388.009 kb on + strandat 1388.014 kb on + strandat 1388.017 kb on - strandat 1388.022 kb on - strandat 1388.022 kb on - strandat 1388.051 kb on + strandat 1388.059 kb on - strandat 1388.079 kb on - strand, within Dsui_1329at 1388.079 kb on - strand, within Dsui_1329at 1388.098 kb on - strand, within Dsui_1329at 1388.103 kb on - strand, within Dsui_1329at 1388.103 kb on - strand, within Dsui_1329at 1388.108 kb on - strand, within Dsui_1329at 1388.125 kb on + strand, within Dsui_1329at 1388.165 kb on + strand, within Dsui_1329at 1388.194 kb on + strand, within Dsui_1329at 1388.194 kb on + strand, within Dsui_1329at 1388.194 kb on + strand, within Dsui_1329at 1388.201 kb on + strand, within Dsui_1329at 1388.201 kb on + strand, within Dsui_1329at 1388.202 kb on - strand, within Dsui_1329at 1388.221 kb on + strand, within Dsui_1329at 1388.224 kb on - strand, within Dsui_1329at 1388.226 kb on + strand, within Dsui_1329at 1388.229 kb on - strand, within Dsui_1329at 1388.241 kb on + strand, within Dsui_1329at 1388.241 kb on - strand, within Dsui_1329at 1388.282 kb on + strand, within Dsui_1329at 1388.282 kb on + strand, within Dsui_1329at 1388.284 kb on - strand, within Dsui_1329at 1388.290 kb on - strand, within Dsui_1329at 1388.290 kb on - strand, within Dsui_1329at 1388.290 kb on - strand, within Dsui_1329at 1388.290 kb on - strand, within Dsui_1329at 1388.297 kb on - strand, within Dsui_1329at 1388.300 kb on + strand, within Dsui_1329at 1388.300 kb on + strand, within Dsui_1329at 1388.303 kb on - strand, within Dsui_1329at 1388.336 kb on + strand, within Dsui_1329at 1388.336 kb on + strand, within Dsui_1329at 1388.343 kb on + strand, within Dsui_1329at 1388.343 kb on + strand, within Dsui_1329at 1388.349 kb on + strand, within Dsui_1329at 1388.376 kb on + strand, within Dsui_1329at 1388.381 kb on + strand, within Dsui_1329at 1388.381 kb on + strand, within Dsui_1329at 1388.381 kb on - strand, within Dsui_1329at 1388.384 kb on - strand, within Dsui_1329at 1388.388 kb on + strand, within Dsui_1329at 1388.388 kb on + strand, within Dsui_1329at 1388.391 kb on - strand, within Dsui_1329at 1388.434 kb on + strandat 1388.435 kb on - strandat 1388.442 kb on - strandat 1388.442 kb on - strandat 1388.448 kb on + strandat 1388.448 kb on + strandat 1388.455 kb on - strandat 1388.455 kb on - strandat 1388.456 kb on - strandat 1388.456 kb on - strandat 1388.480 kb on + strandat 1388.495 kb on - strandat 1388.495 kb on - strandat 1388.503 kb on + strandat 1388.505 kb on + strandat 1388.508 kb on + strandat 1388.508 kb on + strandat 1388.508 kb on + strandat 1388.508 kb on - strandat 1388.508 kb on - strandat 1388.523 kb on - strandat 1388.533 kb on + strandat 1388.541 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.549 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.553 kb on + strandat 1388.554 kb on + strandat 1388.554 kb on + strandat 1388.562 kb on - strandat 1388.562 kb on - strandat 1388.565 kb on + strandat 1388.565 kb on + strandat 1388.565 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.738 kb on + strandat 1388.767 kb on + strandat 1388.788 kb on + strandat 1388.788 kb on + strandat 1388.856 kb on + strandat 1388.864 kb on - strandat 1388.870 kb on + strandat 1388.878 kb on - strandat 1388.878 kb on - strandat 1388.886 kb on - strandat 1389.772 kb on + strandat 1389.787 kb on + strandat 1389.849 kb on - strandat 1389.854 kb on - strandat 1389.855 kb on - strandat 1389.871 kb on + strandat 1389.879 kb on - strandat 1389.888 kb on + strandat 1389.936 kb on + strandat 1389.936 kb on + strandat 1389.944 kb on - strandat 1389.958 kb on + strandat 1389.958 kb on + strandat 1390.013 kb on + strandat 1390.043 kb on + strand, within Dsui_1332at 1390.118 kb on + strand, within Dsui_1332at 1390.124 kb on - strand, within Dsui_1332at 1390.124 kb on - strand, within Dsui_1332at 1390.125 kb on - strand, within Dsui_1332at 1390.191 kb on - strand, within Dsui_1332at 1390.213 kb on + strand, within Dsui_1332at 1390.225 kb on - strand, within Dsui_1332at 1390.233 kb on + strand, within Dsui_1332at 1390.261 kb on - strand, within Dsui_1332at 1390.293 kb on + strand, within Dsui_1332at 1390.293 kb on + strand, within Dsui_1332at 1390.301 kb on - strand, within Dsui_1332at 1390.306 kb on - strand, within Dsui_1332at 1390.315 kb on - strand, within Dsui_1332at 1390.326 kb on - strand, within Dsui_1332at 1390.358 kb on + strand, within Dsui_1332at 1390.358 kb on + strand, within Dsui_1332at 1390.359 kb on + strand, within Dsui_1332at 1390.360 kb on - strand, within Dsui_1332at 1390.366 kb on - strand, within Dsui_1332at 1390.370 kb on + strand, within Dsui_1332at 1390.370 kb on + strand, within Dsui_1332at 1390.371 kb on + strand, within Dsui_1332

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,388,002 - -0.4
1,388,009 + -0.4
1,388,014 + -0.6
1,388,017 - -0.9
1,388,022 - -0.0
1,388,022 - -0.5
1,388,051 + -1.9
1,388,059 - -1.0
1,388,079 - Dsui_1329 0.12 -0.9
1,388,079 - Dsui_1329 0.12 -1.4
1,388,098 - Dsui_1329 0.16 -1.1
1,388,103 - Dsui_1329 0.17 -1.0
1,388,103 - Dsui_1329 0.17 -0.7
1,388,108 - Dsui_1329 0.18 -0.9
1,388,125 + Dsui_1329 0.23 -0.3
1,388,165 + Dsui_1329 0.32 -1.2
1,388,194 + Dsui_1329 0.39 -1.0
1,388,194 + Dsui_1329 0.39 -0.8
1,388,194 + Dsui_1329 0.39 -1.2
1,388,201 + Dsui_1329 0.41 -0.7
1,388,201 + Dsui_1329 0.41 -0.7
1,388,202 - Dsui_1329 0.41 -0.5
1,388,221 + Dsui_1329 0.46 -1.5
1,388,224 - Dsui_1329 0.46 -1.0
1,388,226 + Dsui_1329 0.47 +0.2
1,388,229 - Dsui_1329 0.47 -0.9
1,388,241 + Dsui_1329 0.50 -0.9
1,388,241 - Dsui_1329 0.50 -1.1
1,388,282 + Dsui_1329 0.60 -0.9
1,388,282 + Dsui_1329 0.60 -2.1
1,388,284 - Dsui_1329 0.61 -0.6
1,388,290 - Dsui_1329 0.62 -0.7
1,388,290 - Dsui_1329 0.62 -1.2
1,388,290 - Dsui_1329 0.62 -1.1
1,388,290 - Dsui_1329 0.62 -0.8
1,388,297 - Dsui_1329 0.64 -0.8
1,388,300 + Dsui_1329 0.65 -1.3
1,388,300 + Dsui_1329 0.65 -1.6
1,388,303 - Dsui_1329 0.65 -0.5
1,388,336 + Dsui_1329 0.73 -1.1
1,388,336 + Dsui_1329 0.73 -0.9
1,388,343 + Dsui_1329 0.75 -1.2
1,388,343 + Dsui_1329 0.75 -0.7
1,388,349 + Dsui_1329 0.76 -0.7
1,388,376 + Dsui_1329 0.83 -1.2
1,388,381 + Dsui_1329 0.84 -1.0
1,388,381 + Dsui_1329 0.84 -1.3
1,388,381 - Dsui_1329 0.84 -0.9
1,388,384 - Dsui_1329 0.85 -1.4
1,388,388 + Dsui_1329 0.86 -1.4
1,388,388 + Dsui_1329 0.86 +0.3
1,388,391 - Dsui_1329 0.86 -2.8
1,388,434 + -1.6
1,388,435 - -0.6
1,388,442 - -1.0
1,388,442 - -1.3
1,388,448 + -1.0
1,388,448 + -1.5
1,388,455 - -0.7
1,388,455 - -0.7
1,388,456 - -0.4
1,388,456 - -1.0
1,388,480 + -0.0
1,388,495 - -2.4
1,388,495 - -0.7
1,388,503 + -0.7
1,388,505 + -0.2
1,388,508 + -0.5
1,388,508 + -1.0
1,388,508 + -2.1
1,388,508 - -0.5
1,388,508 - +0.6
1,388,523 - -0.4
1,388,533 + -0.5
1,388,541 + -1.4
1,388,543 + -0.6
1,388,543 + -0.5
1,388,543 + -0.7
1,388,543 + -0.4
1,388,543 + -0.3
1,388,543 + -0.4
1,388,543 + +0.1
1,388,549 - -1.4
1,388,551 - -0.8
1,388,551 - -2.0
1,388,551 - -0.4
1,388,551 - -1.0
1,388,551 - -0.2
1,388,553 + -0.9
1,388,554 + -1.3
1,388,554 + -1.0
1,388,562 - -0.7
1,388,562 - -0.3
1,388,565 + -0.6
1,388,565 + -0.7
1,388,565 + -0.6
1,388,733 + -1.4
1,388,733 + -2.6
1,388,733 + -2.4
1,388,733 + -2.8
1,388,733 + -0.1
1,388,733 + -1.6
1,388,733 + -2.8
1,388,738 + -1.8
1,388,767 + -1.6
1,388,788 + -3.0
1,388,788 + -3.6
1,388,856 + -0.3
1,388,864 - -0.2
1,388,870 + -0.4
1,388,878 - +0.3
1,388,878 - -2.9
1,388,886 - +0.1
1,389,772 + -0.2
1,389,787 + -0.2
1,389,849 - +0.2
1,389,854 - -0.3
1,389,855 - +0.4
1,389,871 + +0.0
1,389,879 - -0.0
1,389,888 + +0.2
1,389,936 + +0.1
1,389,936 + +0.3
1,389,944 - +0.2
1,389,958 + -0.1
1,389,958 + -0.9
1,390,013 + +0.0
1,390,043 + Dsui_1332 0.11 +0.3
1,390,118 + Dsui_1332 0.21 +0.7
1,390,124 - Dsui_1332 0.21 +0.7
1,390,124 - Dsui_1332 0.21 +0.4
1,390,125 - Dsui_1332 0.22 +0.7
1,390,191 - Dsui_1332 0.30 -0.2
1,390,213 + Dsui_1332 0.33 +0.1
1,390,225 - Dsui_1332 0.35 +0.5
1,390,233 + Dsui_1332 0.36 +0.9
1,390,261 - Dsui_1332 0.39 -0.3
1,390,293 + Dsui_1332 0.44 +0.0
1,390,293 + Dsui_1332 0.44 +0.3
1,390,301 - Dsui_1332 0.45 -0.2
1,390,306 - Dsui_1332 0.45 +0.4
1,390,315 - Dsui_1332 0.46 +0.2
1,390,326 - Dsui_1332 0.48 +0.1
1,390,358 + Dsui_1332 0.52 +0.4
1,390,358 + Dsui_1332 0.52 +0.6
1,390,359 + Dsui_1332 0.52 +0.4
1,390,360 - Dsui_1332 0.52 +0.1
1,390,366 - Dsui_1332 0.53 +0.7
1,390,370 + Dsui_1332 0.54 +0.3
1,390,370 + Dsui_1332 0.54 -0.2
1,390,371 + Dsui_1332 0.54 -0.3

Or see this region's nucleotide sequence