Strain Fitness in Dechlorosoma suillum PS around Dsui_1273

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1271 and Dsui_1272 are separated by 357 nucleotidesDsui_1272 and Dsui_1273 are separated by 75 nucleotidesDsui_1273 and Dsui_1274 are separated by 10 nucleotidesDsui_1274 and Dsui_1275 are separated by 36 nucleotidesDsui_1275 and Dsui_1276 are separated by 25 nucleotides Dsui_1271: Dsui_1271 - membrane-bound metallopeptidase, at 1,334,365 to 1,335,825 _1271 Dsui_1272: Dsui_1272 - putative transcriptional regulator, at 1,336,183 to 1,336,509 _1272 Dsui_1273: Dsui_1273 - Rhodanese-related sulfurtransferase, at 1,336,585 to 1,336,998 _1273 Dsui_1274: Dsui_1274 - Glutaredoxin, GrxC family, at 1,337,009 to 1,337,275 _1274 Dsui_1275: Dsui_1275 - protein-export chaperone SecB, at 1,337,312 to 1,337,776 _1275 Dsui_1276: Dsui_1276 - hypothetical protein, at 1,337,802 to 1,338,275 _1276 Position (kb) 1336 1337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1335.638 kb on + strand, within Dsui_1271at 1335.808 kb on - strandat 1335.809 kb on - strandat 1335.834 kb on + strandat 1335.840 kb on + strandat 1335.896 kb on - strandat 1335.896 kb on - strandat 1335.942 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.980 kb on - strandat 1335.986 kb on - strandat 1335.988 kb on + strandat 1335.988 kb on + strandat 1335.988 kb on + strandat 1335.988 kb on + strandat 1335.988 kb on + strandat 1335.988 kb on + strandat 1335.995 kb on + strandat 1335.996 kb on - strandat 1335.996 kb on - strandat 1335.996 kb on - strandat 1335.996 kb on - strandat 1335.996 kb on - strandat 1336.006 kb on - strandat 1336.059 kb on + strandat 1336.059 kb on + strandat 1336.062 kb on + strandat 1336.064 kb on + strandat 1336.067 kb on - strandat 1336.069 kb on + strandat 1336.072 kb on - strandat 1336.072 kb on - strandat 1336.109 kb on + strandat 1336.117 kb on - strandat 1336.119 kb on + strandat 1336.152 kb on - strandat 1336.180 kb on - strandat 1336.183 kb on + strandat 1336.337 kb on - strandat 1336.367 kb on - strandat 1336.377 kb on + strand, within Dsui_1272at 1336.429 kb on - strand, within Dsui_1272at 1336.445 kb on + strand, within Dsui_1272at 1336.445 kb on + strand, within Dsui_1272at 1336.445 kb on + strand, within Dsui_1272at 1336.476 kb on + strand, within Dsui_1272at 1336.484 kb on - strandat 1336.497 kb on - strandat 1336.497 kb on - strandat 1336.515 kb on + strandat 1336.523 kb on - strandat 1336.523 kb on - strandat 1336.523 kb on - strandat 1336.642 kb on + strand, within Dsui_1273at 1336.697 kb on + strand, within Dsui_1273at 1336.700 kb on + strand, within Dsui_1273at 1336.980 kb on + strandat 1336.992 kb on + strandat 1336.992 kb on + strandat 1336.992 kb on + strandat 1336.992 kb on + strandat 1336.994 kb on + strandat 1337.023 kb on + strandat 1337.077 kb on + strand, within Dsui_1274at 1337.077 kb on + strand, within Dsui_1274at 1337.104 kb on + strand, within Dsui_1274at 1337.163 kb on + strand, within Dsui_1274at 1337.208 kb on + strand, within Dsui_1274at 1337.225 kb on + strand, within Dsui_1274at 1337.405 kb on + strand, within Dsui_1275at 1337.603 kb on + strand, within Dsui_1275at 1337.673 kb on + strand, within Dsui_1275at 1337.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,335,638 + Dsui_1271 0.87 -1.0
1,335,808 - -1.3
1,335,809 - +0.2
1,335,834 + +0.3
1,335,840 + +0.4
1,335,896 - -1.9
1,335,896 - -0.7
1,335,942 - -0.2
1,335,948 - +0.9
1,335,948 - -0.7
1,335,980 - -0.5
1,335,986 - -1.7
1,335,988 + -2.8
1,335,988 + -1.2
1,335,988 + -0.5
1,335,988 + -0.7
1,335,988 + -0.4
1,335,988 + -2.1
1,335,995 + -0.6
1,335,996 - -1.4
1,335,996 - -1.6
1,335,996 - -0.2
1,335,996 - -0.7
1,335,996 - +0.1
1,336,006 - +0.3
1,336,059 + +0.5
1,336,059 + -0.1
1,336,062 + -1.4
1,336,064 + -1.4
1,336,067 - -0.1
1,336,069 + -1.5
1,336,072 - +0.6
1,336,072 - -1.1
1,336,109 + +1.1
1,336,117 - +2.8
1,336,119 + +0.4
1,336,152 - +2.8
1,336,180 - +0.8
1,336,183 + +2.2
1,336,337 - +0.4
1,336,367 - +0.2
1,336,377 + Dsui_1272 0.59 +0.7
1,336,429 - Dsui_1272 0.75 -1.4
1,336,445 + Dsui_1272 0.80 +1.5
1,336,445 + Dsui_1272 0.80 -0.2
1,336,445 + Dsui_1272 0.80 +0.9
1,336,476 + Dsui_1272 0.90 +0.1
1,336,484 - +1.3
1,336,497 - +0.3
1,336,497 - -2.4
1,336,515 + -0.1
1,336,523 - +0.4
1,336,523 - -0.7
1,336,523 - +0.6
1,336,642 + Dsui_1273 0.14 +0.6
1,336,697 + Dsui_1273 0.27 +0.5
1,336,700 + Dsui_1273 0.28 -1.9
1,336,980 + -0.3
1,336,992 + +0.2
1,336,992 + +0.6
1,336,992 + -0.1
1,336,992 + -0.1
1,336,994 + -0.2
1,337,023 + +0.3
1,337,077 + Dsui_1274 0.25 +0.7
1,337,077 + Dsui_1274 0.25 +0.5
1,337,104 + Dsui_1274 0.36 +0.5
1,337,163 + Dsui_1274 0.58 +0.3
1,337,208 + Dsui_1274 0.75 +0.0
1,337,225 + Dsui_1274 0.81 +0.7
1,337,405 + Dsui_1275 0.20 +0.2
1,337,603 + Dsui_1275 0.63 -1.4
1,337,673 + Dsui_1275 0.78 +1.0
1,337,794 + +0.4

Or see this region's nucleotide sequence